RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SIN3AQ96ST3 1273 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 NUP88Q99567 741 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 ARPC5LQ9BPX5 153 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 MCMBPQ9BTE3 642 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 HTATIP2Q9BUP3 242 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 UBA5Q9GZZ9 404 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 CSRNP2Q9H175 543 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 PUF60Q9UHX1 559 aaKnown RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 TMEFF2Q9UIK5 374 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-208ENST00000551691 INTUQ9ULD6 942 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 ZBTB21Q9ULJ3 1066 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 ATP6V0A2Q9Y487 856 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 TAF6LQ9Y6J9 622 aa4.59□□□□□ -1.67
LIMA1-208ENST00000551691 RTL9Q8NET4 1388 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 A0A1W2PQ27 194 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 A0A1W2PQ64 194 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 A0A1W2PQC6 194 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 A0A1W2PQD8 194 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 FADS2P1A8MWK0 482 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 IFRD1O00458 451 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-208ENST00000551691 KDM1AO60341 852 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 OFD1O75665 1012 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 CKMP06732 381 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 CCL5P13501 91 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 TRIM27P14373 513 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 GPTP24298 496 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 CTGFP29279 349 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 LIMS1P48059 325 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 NEK3P51956 506 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 KIF11P52732 1056 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 ERVK-21P61565 698 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 FKBP1BP68106 108 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 SUSD4Q5VX71 490 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 IL31Q6EBC2 164 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 SULT6B1Q6IMI4 303 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 OVCH1Q7RTY7 1134 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 GGNQ86UU5 652 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 FAM129CQ86XR2 697 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 CPNE8Q86YQ8 564 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 CCDC103Q8IW40 242 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 TDHQ8IZJ6 230 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 ADGRG2Q8IZP9 1017 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 KIAA1958Q8N8K9 716 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 ACRBPQ8NEB7 543 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 PJA1Q8NG27 643 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 PPM1EQ8WY54 764 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 IL17RAQ96F46 866 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 FCRL2Q96LA5 508 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-208ENST00000551691 PWWP2AQ96N64 755 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 PTCHD1Q96NR3 888 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 CRAMP1Q96RY5 1269 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 MMP19Q99542 508 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 SARGQ9BW04 601 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 SLC12A9Q9BXP2 914 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 FAM204AQ9H8W3 233 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 TCF7L1Q9HCS4 588 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 VTA1Q9NP79 307 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 AP5S1Q9NUS5 200 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 ERVK13-1Q9NX77 482 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 H2AFY2Q9P0M6 372 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-208ENST00000551691 IMPACTQ9P2X3 320 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 PLA2G2DQ9UNK4 145 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 NUB1Q9Y5A7 615 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 WDFY4Q6ZS81 3184 aa4.58□□□□□ -1.68
LIMA1-208ENST00000551691 XIRP2A4UGR9 3374 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 ZNF609O15014 1411 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CDHR2Q9BYE9 1310 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CCDC189A1A4V9 331 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CTNND1O60716 968 aaKnown RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 DGKIO75912 1065 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 MPOP05164 745 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 RBP3P10745 1247 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 PDE6AP16499 860 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 SLC9A1P19634 815 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CD40P25942 277 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 BCL6P41182 706 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 YBX1P67809 324 aaKnown RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 TESK1Q15569 626 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 RRP12Q5JTH9 1297 aaKnown RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CLEC4GQ6UXB4 293 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 FRMD7Q6ZUT3 714 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CATIPQ7Z7H3 387 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 RASSF3Q86WH2 238 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 ZZZ3Q8IYH5 903 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CBARPQ8N350 705 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CAMKK1Q8N5S9 505 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 ENAHQ8N8S7 591 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 DIS3LQ8TF46 1054 aaKnown RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 E2F7Q96AV8 911 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 TRMT2BQ96GJ1 504 aaKnown RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 PAWRQ96IZ0 340 aaKnown RBP4.57□□□□□ -1.68
LIMA1-208ENST00000551691 AIFM3Q96NN9 605 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 MXD3Q9BW11 206 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 CARD11Q9BXL7 1154 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 VPS33BQ9H267 617 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 PPCSQ9HAB8 311 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 C1orf112Q9NSG2 853 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 DNAJC28Q9NX36 388 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 DAAM1Q9Y4D1 1078 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 SPO11Q9Y5K1 396 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms