RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 SARSP49591 514 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 NNTQ13423 1086 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 KCNC3Q14003 757 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 KARSQ15046 597 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 IL17AQ16552 155 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 TPD52L1Q16890 204 aaPredicted RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 CEP55Q53EZ4 464 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 NT5DC1Q5TFE4 455 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 IER5Q5VY09 327 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 PDE12Q6L8Q7 609 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 TMEM184AQ6ZMB5 413 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 USP49Q70CQ1 688 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 NLRX1Q86UT6 975 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 GPIHBP1Q8IV16 184 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 ZDHHC14Q8IZN3 488 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 ANKRD20A12PQ8NF67 263 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 CDHR1Q96JP9 859 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 PPP1R16BQ96T49 567 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 RTP3Q9BQQ7 232 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 TEKT3Q9BXF9 490 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 TMX1Q9H3N1 280 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 SEMA4AQ9H3S1 761 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 KCNMB3Q9NPA1 279 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 NGRNQ9NPE2 291 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 NCDNQ9UBB6 729 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 CDV3Q9UKY7 258 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 CA14Q9ULX7 337 aa7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 FASNP49327 2511 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-208ENST00000549341 IGSF9BQ9UPX0 1349 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MAFGO15525 162 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 NARSO43776 548 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MGEA5O60502 916 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 DKC1O60832 514 aaKnown RBP eCLIP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 GAS7O60861 476 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 CLASP2O75122 1294 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 KIF20AO95235 890 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 EOMESO95936 686 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 DCNP07585 359 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 PLCG1P19174 1290 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ERCC5P28715 1186 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 GSK3AP49840 483 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MRPS9P82933 396 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MYL5Q02045 173 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 TDGQ13569 410 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 COL9A2Q14055 689 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 SMC1AQ14683 1233 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 KCNB1Q14721 858 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MARCH8Q5T0T0 291 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 LRCH2Q5VUJ6 765 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 PCNX4Q63HM2 1172 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 NCAPH2Q6IBW4 605 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 KIAA1841Q6NSI8 718 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 CNNM4Q6P4Q7 775 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 TMC5Q6UXY8 1006 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 CCDC149Q6ZUS6 474 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 RNF169Q8NCN4 708 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 FEZF2Q8TBJ5 459 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 TRAPPC12Q8WVT3 735 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 CRYGNQ8WXF5 182 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 LARP4BQ92615 738 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ACSF2Q96CM8 615 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ZNF558Q96NG5 402 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 INPP4AQ96PE3 977 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 PPP1R9BQ96SB3 815 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 RIT2Q99578 217 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ADAM2Q99965 735 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MXRA8Q9BRK3 442 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ZNF577Q9BSK1 485 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 TBC1D17Q9HA65 648 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 TUFT1Q9NNX1 390 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 CYP26B1Q9NR63 512 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 TBC1D22BQ9NU19 505 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 EXOC1Q9NV70 894 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 ERAP1Q9NZ08 941 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MAN1B1Q9UKM7 699 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 DUSP12Q9UNI6 340 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 DNM3Q9UQ16 869 aa7.82□□□□□ -1.16
DEPDC4-208ENST00000549341 MBLAC1A4D2B0 266 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 C2orf71A6NGG8 1288 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 SPATA31C2B4DYI2 1134 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 MEIS1O00470 390 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 NRDCO43847 1150 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ADCY5O95622 1261 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 FGFR1OPO95684 399 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 RPN1P04843 607 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 EPCAMP16422 314 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 CDK11BP21127 795 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 PPM1AP35813 382 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 WDR4P57081 412 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ASIC1P78348 528 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 KRT76Q01546 638 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 KRT17Q04695 432 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 DPYDQ12882 1025 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 PSMD2Q13200 908 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 MORC3Q14149 939 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 DPCR1Q3MIW9 517 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 HS1BP3Q53T59 392 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 ATAT1Q5SQI0 421 aa7.81□□□□□ -1.16
DEPDC4-208ENST00000549341 HYIQ5T013 277 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms