RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CAMKK1Q8N5S9 505 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 ZBTB34Q8NCN2 500 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 OR2I1PQ8NGU4 316 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 DIS3LQ8TF46 1054 aaKnown RBP5.28□□□□□ -1.56
VPS29-205ENST00000548539 RIN2Q8WYP3 895 aaPredicted RBP5.28□□□□□ -1.56
VPS29-205ENST00000548539 CFHR4Q92496 578 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 KAT5Q92993 513 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 RAB24Q969Q5 203 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 MVB12AQ96EY5 273 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 HAPLN2Q9GZV7 340 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 GREM2Q9H772 168 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 FAM50BQ9Y247 325 aa5.28□□□□□ -1.56
VPS29-205ENST00000548539 A6NNZ2 444 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 PLIN1O60240 522 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 PRAMEF4O60810 478 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 DTNBO60941 627 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 TMEM127O75204 238 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 MAFO75444 373 aaPredicted RBP5.27□□□□□ -1.57
VPS29-205ENST00000548539 LY86O95711 162 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 ADSLP30566 484 aaPredicted RBP5.27□□□□□ -1.57
VPS29-205ENST00000548539 ADRA1BP35368 520 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 GALEQ14376 348 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 GBX1Q14549 363 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 LLGL1Q15334 1064 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 CCDC178Q5BJE1 867 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 ABHD15Q6UXT9 468 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 WDR92Q96MX6 357 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 KIAA1683Q9H0B3 1180 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 CHST12Q9NRB3 414 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 SCOCQ9UIL1 159 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 FBXO10Q9UK96 956 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 IPPQ9Y573 584 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 PCDHA13Q9Y5I0 950 aa5.27□□□□□ -1.57
VPS29-205ENST00000548539 AKR1B10O60218 316 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 NUDT3O95989 172 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 RHBDL3P58872 404 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 ADAM15Q13444 863 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 RRP1BQ14684 758 aaKnown RBP5.26□□□□□ -1.57
VPS29-205ENST00000548539 PGS1Q32NB8 556 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 KLHDC10Q6PID8 442 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 LARP4Q71RC2 724 aaKnown RBP eCLIP5.26□□□□□ -1.579e-6■■□□□ 12.1
VPS29-205ENST00000548539 MIGA2Q7L4E1 593 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 GPR135Q8IZ08 494 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 RTKN2Q8IZC4 609 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 MSL3Q8N5Y2 521 aaKnown RBP5.26□□□□□ -1.57
VPS29-205ENST00000548539 PIK3C3Q8NEB9 887 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 NKD2Q969F2 451 aaPredicted RBP5.26□□□□□ -1.57
VPS29-205ENST00000548539 C1orf112Q9NSG2 853 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 RBM12Q9NTZ6 932 aaKnown RBP5.26□□□□□ -1.57
VPS29-205ENST00000548539 PTGFRNQ9P2B2 879 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 HECAQ9UBI9 543 aaPredicted RBP5.26□□□□□ -1.57
VPS29-205ENST00000548539 FAM184BQ9ULE4 1060 aa5.26□□□□□ -1.57
VPS29-205ENST00000548539 ARID4BQ4LE39 1312 aaPredicted RBP5.25□□□□□ -1.57
VPS29-205ENST00000548539 A0A1W2PR48 441 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 FSBPO95073 299 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 GCP02774 474 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 ALDH2P05091 517 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 GAAP10253 952 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 CTSSP25774 331 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 HLTFQ14527 1009 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS29-205ENST00000548539 SEPT2Q15019 361 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 EIF4HQ15056 248 aaKnown RBP5.25□□□□□ -1.57
VPS29-205ENST00000548539 UBE3CQ15386 1083 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 COBLL1Q53SF7 1204 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 OVCH2Q7RTZ1 564 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 RHOT1Q8IXI2 618 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 PRR18Q8N4B5 295 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 GPR156Q8NFN8 814 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 PPP1R14CQ8TAE6 165 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 HDAC10Q969S8 669 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 TMEM176AQ96HP8 235 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 UIMC1Q96RL1 719 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 CHMP4AQ9BY43 222 aa5.25□□□□□ -1.57
VPS29-205ENST00000548539 APAF1O14727 1248 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 RPS6KA4O75676 772 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 RHOBTB3O94955 611 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 LTA4HP09960 611 aaKnown RBP5.24□□□□□ -1.57
VPS29-205ENST00000548539 MEOX1P50221 254 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 USP14P54578 494 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 MGAT2Q10469 447 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 UBE4AQ14139 1066 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 ACAP1Q15027 740 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 PCOLCEQ15113 449 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 MAN2A1Q16706 1144 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 SPTY2D1Q68D10 685 aaPredicted RBP5.24□□□□□ -1.57
VPS29-205ENST00000548539 IL31Q6EBC2 164 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 DENND1CQ8IV53 801 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 PMM1Q92871 262 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 C1GALT1C1Q96EU7 318 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 FAM193BQ96PV7 902 aaPredicted RBP5.24□□□□□ -1.57
VPS29-205ENST00000548539 C7orf25Q9BPX7 421 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 POLR3GLQ9BT43 218 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 SARGQ9BW04 601 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 OSBPL6Q9BZF3 934 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 OR10A2Q9H208 303 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 MAN1C1Q9NR34 630 aa5.24□□□□□ -1.57
VPS29-205ENST00000548539 RBM8AQ9Y5S9 174 aaKnown RBP5.24□□□□□ -1.57
VPS29-205ENST00000548539 LRRC14BA6NHZ5 514 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 MASP2O00187 686 aa5.23□□□□□ -1.57
VPS29-205ENST00000548539 TPP1O14773 563 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms