RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RAB20Q9NX57 234 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 GABBR1Q9UBS5 961 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 TBX20Q9UMR3 447 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 TRIM33Q9UPN9 1127 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 FAM187AA6NFU0 413 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ZSCAN5DPP0CG00 497 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 KRT10P13645 584 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 CTNNA2P26232 953 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 CCDC197Q8NCU1 140 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ARHGEF2Q92974 986 aaKnown RBP16.09■□□□□ 0.17
USP28-214ENST00000545540 ZKSCAN4Q969J2 545 aaPredicted RBP16.09■□□□□ 0.17
USP28-214ENST00000545540 MTUS1Q9ULD2 1270 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 STK24Q9Y6E0 443 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 GREB1LQ9C091 1923 aaPredicted RBP16.09■□□□□ 0.17
USP28-214ENST00000545540 LTBP1Q14766 1721 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 TP73O15350 636 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 CETPP11597 493 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 TNNI1P19237 187 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ANXA13P27216 316 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ITGA8P53708 1063 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 MFAP3P55082 362 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ADCY2Q08462 1091 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ZBTB41Q5SVQ8 909 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 KRT39Q6A163 491 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 TMEM130Q8N3G9 435 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 CCT6BQ92526 530 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 HERC5Q9UII4 1024 aaKnown RBP16.09■□□□□ 0.17
USP28-214ENST00000545540 DNAH12Q6ZR08 3092 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 CNTNAP1P78357 1384 aa16.08■□□□□ 0.17
USP28-214ENST00000545540 TMEM120BA0PK00 339 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 SLC26A4O43511 780 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 ETS1P14921 441 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 NUGGCQ68CJ6 796 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 SWSAP1Q6NVH7 229 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 FAM47EQ6ZV65 393 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 EIF1ADQ8N9N8 165 aaKnown RBP16.08■□□□□ 0.16
USP28-214ENST00000545540 GLIS1Q8NBF1 620 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 TMEM161BQ8NDZ6 487 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 CD101Q93033 1021 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 NT5C1BQ96P26 610 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 CEP89Q96ST8 783 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 EHMT1Q9H9B1 1298 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 TPX2Q9ULW0 747 aaKnown RBP16.08■□□□□ 0.16
USP28-214ENST00000545540 AGAP1Q9UPQ3 857 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 RASSF9O75901 435 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 RALAP11233 206 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 MMP13P45452 471 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 SETQ01105 290 aaPredicted RBP16.08■□□□□ 0.16
USP28-214ENST00000545540 SLC9A9Q8IVB4 645 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 SUGP1Q8IWZ8 645 aaKnown RBP16.08■□□□□ 0.16
USP28-214ENST00000545540 SRRM1Q8IYB3 904 aaKnown RBP16.08■□□□□ 0.16
USP28-214ENST00000545540 RIT2Q99578 217 aa16.08■□□□□ 0.16
USP28-214ENST00000545540 CTDP1Q9Y5B0 961 aaPredicted RBP16.08■□□□□ 0.16
USP28-214ENST00000545540 MIF4GDA9UHW6 222 aaKnown RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 ZNF862O60290 1169 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 EIF3BP55884 814 aaKnown RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 C1orf131Q8NDD1 294 aaKnown RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 FBXL13Q8NEE6 735 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 FAM151AQ8WW52 585 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 SHC3Q92529 594 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 ZNF516Q92618 1163 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 TMEM143Q96AN5 459 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 GSTTP1A0A1W2PQM5 241 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 ONECUT3O60422 494 aaPredicted RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 SPAG7O75391 227 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 SMTNP53814 917 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 BAATQ14032 418 aaPredicted RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 C11orf63Q6NUN7 778 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 FAM212AQ96EL1 285 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 PCYOX1Q9UHG3 505 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 PNMA3Q9UL41 463 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 L3MBTL1Q9Y468 752 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 PASKQ96RG2 1323 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 EIF4E1BA6NMX2 242 aaKnown RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 GRIN3BO60391 1043 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 NUDT17P0C025 328 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 GTF2BQ00403 316 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 SYCP2LQ5T4T6 812 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 ARHGEF16Q5VV41 709 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 ANKFY1Q9P2R3 1169 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 STK38LQ9Y2H1 464 aa16.07■□□□□ 0.16
USP28-214ENST00000545540 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.07■□□□□ 0.16
USP28-214ENST00000545540 ATAD5Q96QE3 1844 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 CCT8L1PA6NM43 557 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 A8MUI8 341 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 GOLGA8SH3BPF8 625 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 GOLGA8MH3BSY2 632 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 BANF1O75531 89 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 ICAM1P05362 532 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 TAS2R40P59535 323 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 CDR2Q01850 454 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 DMP1Q13316 513 aaPredicted RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 MTMR2Q13614 643 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 MTERF2Q49AM1 385 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 RSBN1LQ6PCB5 846 aaPredicted RBP16.06■□□□□ 0.16
USP28-214ENST00000545540 PARP9Q8IXQ6 854 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 WNT8AQ9H1J5 351 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 UMODL1Q5DID0 1318 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 THAP12O43422 761 aa16.06■□□□□ 0.16
USP28-214ENST00000545540 KCNJ2P63252 427 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms