RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ST13P50502 369 aaKnown RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 COG7P83436 770 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CUL2Q13617 745 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CASP8Q14790 479 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 HYIQ5T013 277 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ATL3Q6DD88 541 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 XRRA1Q6P2D8 792 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ARID3BQ8IVW6 561 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 LSMEM1Q8N8F7 131 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 KCNH5Q8NCM2 988 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 LRRC8CQ8TDW0 803 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ANKRD36BP1Q96IX9 119 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 DNAJC1Q96KC8 554 aaKnown RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 PRICKLE1Q96MT3 831 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 TMEM237Q96Q45 408 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CABP2Q9NPB3 220 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CLEC11AQ9Y240 323 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 TLL2Q9Y6L7 1015 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 IFNA14P01570 189 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 EPB41P11171 864 aaKnown RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 SFTPCP11686 197 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 P4HA1P13674 534 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 VARSP26640 1264 aaKnown RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 LSP1P33241 339 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 MADCAM1Q13477 382 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 BLMHQ13867 455 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CCINQ13939 588 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 SULT1C3Q6IMI6 304 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 B3GNT6Q6ZMB0 384 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TMEM139Q8IV31 216 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TTC8Q8TAM2 541 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CAGE1Q8TC20 777 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ACSBG1Q96GR2 724 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CAPZA3Q96KX2 299 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 OLFM3Q96PB7 478 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 NUP58Q9BVL2 599 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 THAP9Q9H5L6 903 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 RTCBQ9Y3I0 505 aaKnown RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ADAMTS13Q76LX8 1427 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TMEM2Q9UHN6 1383 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 PLEKHG1Q9ULL1 1385 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 AOX1Q06278 1338 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 MAGEB3O15480 346 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 MEFVO15553 781 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ICMTO60725 284 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TSC22D2O75157 780 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 PENKP01210 267 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 DNTTP04053 509 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ATF4P18848 351 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 KCNJ5P48544 419 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ZNF211Q13398 564 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 BMPR2Q13873 1038 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TUBB8Q3ZCM7 444 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 MMEL1Q495T6 779 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 HDXQ7Z353 690 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CCDC13Q8IYE1 715 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 SMG7Q92540 1137 aaKnown RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 BPIFA3Q9BQP9 254 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ACAT2Q9BWD1 397 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 BRD9Q9H8M2 597 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 ANKEF1Q9NU02 776 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TXNDC16Q9P2K2 825 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 AHDC1Q5TGY3 1603 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 MAGEA13PA6NCF6 341 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 DNAJB5O75953 348 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CLTBP09497 229 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 SLC5A1P13866 664 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CD97P48960 835 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 CLK3P49761 638 aaKnown RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 NOSTRINQ8IVI9 506 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 LEO1Q8WVC0 666 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 INTS12Q96CB8 462 aaKnown RBP9.42□□□□□ -0.9
VPS13D-212ENST00000543766 TRIM62Q9BVG3 475 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 SHCBP1LQ9BZQ2 653 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 INPP5FQ9Y2H2 1132 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 MAD1L1Q9Y6D9 718 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 AP1M2Q9Y6Q5 423 aa9.42□□□□□ -0.9
VPS13D-212ENST00000543766 WDR19Q8NEZ3 1342 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 E9PMD0 336 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 TK2O00142 265 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 RNF113AO15541 343 aaKnown RBP9.41□□□□□ -0.9
VPS13D-212ENST00000543766 RRP8O43159 456 aaKnown RBP9.41□□□□□ -0.9
VPS13D-212ENST00000543766 HSPA4LO95757 839 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 HMOX2P30519 316 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 PRKAR1BP31321 381 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 NLRP6P59044 892 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 CCNA1P78396 465 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 STX1AQ16623 288 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 CTC1Q2NKJ3 1217 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 ATP13A4Q4VNC1 1196 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 TRIM67Q6ZTA4 783 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 MYCBPAPQ8TBZ2 947 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 CCDC8Q9H0W5 538 aaPredicted RBP9.41□□□□□ -0.9
VPS13D-212ENST00000543766 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.41□□□□□ -0.9
VPS13D-212ENST00000543766 TMEM88BA6NKF7 163 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 MEN1O00255 615 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 ADCY3O60266 1144 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 PHBP35232 272 aa9.41□□□□□ -0.9
VPS13D-212ENST00000543766 RFC5P40937 340 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms