RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CACNA2D4Q7Z3S7 1137 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 NPAS3Q8IXF0 933 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 SPEM1Q8N4L4 309 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 DEFB124Q8NES8 71 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 ANKK1Q8NFD2 765 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 ADAM32Q8TC27 787 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 STK32AQ8WU08 396 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 ZNF592Q92610 1267 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 BBC3Q96PG8 261 aaPredicted RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 TMEM175Q9BSA9 504 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 TRMT61BQ9BVS5 477 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 COLEC11Q9BWP8 271 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 APOL6Q9BWW8 343 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 RHOBTB2Q9BYZ6 727 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 CNNM2Q9H8M5 875 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 RSAD1Q9HA92 442 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 NRBP2Q9NSY0 501 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 C2orf42Q9NWW7 574 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 KANSL3Q9P2N6 904 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 DNMT3BQ9UBC3 853 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 CEP131Q9UPN4 1083 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 WASF3Q9UPY6 502 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 PCDHB3Q9Y5E6 796 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 PCDHB2Q9Y5E7 798 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 PIAS3Q9Y6X2 628 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 ZMYM6O95789 1325 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 SDK1Q7Z5N4 2213 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 CNOT1A5YKK6 2376 aaKnown RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 K7ESF4 209 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 TADA2AO75478 443 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 PSAPP07602 524 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 HNRNPA1P09651 372 aaKnown RBP eCLIP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CHRNB1P11230 501 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 ITGA4P13612 1032 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CEACAM1P13688 526 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 JUNDP17535 347 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 SOX9P48436 509 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 RAB27AP51159 221 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 KPNA1P52294 538 aaPredicted RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 FGD1P98174 961 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 C19orf57Q0VDD7 668 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 TROAPQ12815 778 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 TRDNQ13061 729 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 DRP2Q13474 957 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CEP55Q53EZ4 464 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 AXDND1Q5T1B0 1012 aaPredicted RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 ANKRD45Q5TZF3 282 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CWC27Q6UX04 472 aaKnown RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 HEATR3Q7Z4Q2 680 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CATIPQ7Z7H3 387 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 WDR5BQ86VZ2 330 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 PLA2G4DQ86XP0 818 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 RHPN2Q8IUC4 686 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 KSR1Q8IVT5 923 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CTCFLQ8NI51 663 aaPredicted RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 SLC7A14Q8TBB6 771 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 FAM200AQ8TCP9 573 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 CSGALNACT1Q8TDX6 532 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 HASPINQ8TF76 798 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 NLRP4Q96MN2 994 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 SH2D3AQ9BRG2 576 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 GPR62Q9BZJ7 368 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 INO80BQ9C086 356 aaPredicted RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 ZNF334Q9HCZ1 680 aaPredicted RBP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.36□□□□□ -1.55
LIMS1-214ENST00000542845 VPS45Q9NRW7 570 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 MARCH5Q9NX47 278 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 MIOSQ9NXC5 875 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 FNIP2Q9P278 1114 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 MSRB2Q9Y3D2 182 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 GPSM3Q9Y4H4 160 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 WDR81Q562E7 1941 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 SHROOM3Q8TF72 1996 aa5.36□□□□□ -1.55
LIMS1-214ENST00000542845 ZFYVE26Q68DK2 2539 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 SPAARA0A1B0GVQ0 90 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 SLC38A8A6NNN8 435 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 NRG2O14511 850 aaPredicted RBP5.35□□□□□ -1.55
LIMS1-214ENST00000542845 LCE2BO14633 110 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 ZNF263O14978 683 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 DCLK1O15075 740 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 EXTL3O43909 919 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CAVIN2O95810 425 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CEBPBP17676 345 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 SDSP20132 328 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 GBP1P32455 592 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 VIPR2P41587 438 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 RAP1GAPP47736 663 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 DNM2P50570 870 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 SCNN1GP51170 649 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 SIM1P81133 766 aaPredicted RBP5.35□□□□□ -1.55
LIMS1-214ENST00000542845 PTK2Q05397 1052 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 LRRC32Q14392 662 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 PTPRNQ16849 979 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 MTERF2Q49AM1 385 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 PLA2G2CQ5R387 149 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 C20orf194Q5TEA3 1177 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 LARP1BQ659C4 914 aaKnown RBP5.35□□□□□ -1.55
LIMS1-214ENST00000542845 FUT10Q6P4F1 479 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 THSD4Q6ZMP0 1018 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 PROSER1Q86XN7 944 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms