RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MAPK6Q16659 721 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 ZACNQ401N2 412 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 NPLOC4Q8TAT6 608 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 CCDC113Q9H0I3 377 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 KIAA1586Q9HCI6 787 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 ERAP1Q9NZ08 941 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 OGFRQ9NZT2 677 aa15.64■□□□□ 0.09
CLIP1-216ENST00000541410 IGKV6-21A0A0C4DH24 114 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 ADCY6O43306 1168 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 VTNP04004 478 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 TMEM253P0C7T8 217 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 GTF2H1P32780 548 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 HUNKP57058 714 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 IRX5P78411 483 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 FMO1Q01740 532 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 MXD4Q14582 209 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 PHLDB2Q86SQ0 1253 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 TCP11Q8WWU5 503 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 ACO2Q99798 780 aaKnown RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 MRPL4Q9BYD3 311 aaKnown RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 APOBEC3GQ9HC16 384 aaKnown RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 DMGDHQ9UI17 866 aaKnown RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 CNTNAP2Q9UHC6 1331 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 HBP1O60381 514 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 PHACTR2O75167 634 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 GH1P01241 217 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 MYBL2P10244 700 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 GCLCP48506 637 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 MCCD1P59942 119 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 BRD3Q15059 726 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 CFAP221Q4G0U5 840 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 C2CD6Q53TS8 623 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 BEND6Q5SZJ8 279 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 EEF1DP3Q658K8 133 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 ZBTB8OSQ8IWT0 167 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 RFFLQ8WZ73 363 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 TAF4BQ92750 862 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 LENG1Q96BZ8 264 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-216ENST00000541410 MAML3Q96JK9 1138 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 KATNBL1Q9H079 304 aa15.63■□□□□ 0.09
CLIP1-216ENST00000541410 ANKRD62A6NC57 917 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CEP104O60308 925 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 TOM1L1O75674 476 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CST3P01034 146 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-216ENST00000541410 SMPD1P17405 629 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 PDE6CP51160 858 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 LAMC2Q13753 1193 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 IFI16Q16666 785 aaKnown RBP15.62■□□□□ 0.09
CLIP1-216ENST00000541410 WDR44Q5JSH3 913 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 TMEM192Q8IY95 271 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 BTBD6Q96KE9 485 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 FUT8Q9BYC5 575 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 MTMR12Q9C0I1 747 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CTTNBP2NLQ9P2B4 639 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 MORF4L1Q9UBU8 362 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 TSKSQ9UJT2 592 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 INTUQ9ULD6 942 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CEP350Q5VT06 3117 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 C22orf31O95567 290 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 ABCD1P33897 745 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 PLA2G4AP47712 749 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 EFNA5P52803 228 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CLDN10P78369 228 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CDCA2Q69YH5 1023 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-216ENST00000541410 NT5DC3Q86UY8 548 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 CPNE8Q86YQ8 564 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 GTF3C2Q8WUA4 911 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-216ENST00000541410 RPGRIP1Q96KN7 1286 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 PARK7Q99497 189 aaKnown RBP15.62■□□□□ 0.09
CLIP1-216ENST00000541410 PRDM10Q9NQV6 1147 aa15.62■□□□□ 0.09
CLIP1-216ENST00000541410 A0A087WZ62 844 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 STRNO43815 780 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 FAM189A1O60320 539 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 LDHAP00338 332 aaKnown RBP15.61■□□□□ 0.09
CLIP1-216ENST00000541410 FMNL3Q8IVF7 1028 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 FDXACB1Q9BRP7 624 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-216ENST00000541410 AP1M1Q9BXS5 423 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 VTA1Q9NP79 307 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 AKT3Q9Y243 479 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 SLC45A1Q9Y2W3 748 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 NUB1Q9Y5A7 615 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 A0A0A6YYK5 440 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-216ENST00000541410 ZSCAN5CA6NGD5 496 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-216ENST00000541410 NCANO14594 1321 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 CFHP08603 1231 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 ZNF568Q3ZCX4 644 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 LLGL2Q6P1M3 1020 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 ZPBP2Q6X784 338 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 PLEKHH3Q7Z736 793 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 KLHL7Q8IXQ5 586 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 DDX1Q92499 740 aaKnown RBP15.61■□□□□ 0.09
CLIP1-216ENST00000541410 CGRRF1Q99675 332 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 C16orf70Q9BSU1 422 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 DAAM1Q9Y4D1 1078 aa15.61■□□□□ 0.09
CLIP1-216ENST00000541410 IGF2BP3O00425 579 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLIP1-216ENST00000541410 ABLIM1O14639 778 aa15.6■□□□□ 0.09
CLIP1-216ENST00000541410 FKBP1BP68106 108 aa15.6■□□□□ 0.09
CLIP1-216ENST00000541410 TUBB4BP68371 445 aa15.6■□□□□ 0.09
CLIP1-216ENST00000541410 TFAMQ00059 246 aaKnown RBP15.6■□□□□ 0.09
CLIP1-216ENST00000541410 GRB14Q14449 540 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms