RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.19□□□□□ -0.623e-6■□□□□ 9.8
CHFR-219ENST00000541341 OTOP2Q7RTS6 562 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 TLK2Q86UE8 772 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 FAM126BQ8IXS8 530 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 TEX9Q8N6V9 391 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 PCSK9Q8NBP7 692 aaKnown RBP11.19□□□□□ -0.62
CHFR-219ENST00000541341 CASKIN2Q8WXE0 1202 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 GRAMD1AQ96CP6 724 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 SPAG5Q96R06 1193 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 TRIM7Q9C029 511 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 TRIM6Q9C030 488 aaPredicted RBP11.19□□□□□ -0.62
CHFR-219ENST00000541341 KATNBL1Q9H079 304 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 TRPV6Q9H1D0 765 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 NKX2-4Q9H2Z4 354 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 CPVLQ9H3G5 476 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 ACAD9Q9H845 621 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 PPANQ9NQ55 473 aaKnown RBP11.19□□□□□ -0.62
CHFR-219ENST00000541341 AMFRQ9UKV5 643 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 DUSP10Q9Y6W6 482 aa11.19□□□□□ -0.62
CHFR-219ENST00000541341 COL4A4P53420 1690 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 MROH7Q68CQ1 1323 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 PNMA6FA0A0J9YX94 578 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 MIF4GDA9UHW6 222 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 STXBP3O00186 592 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 KRIT1O00522 736 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 TLR3O15455 904 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 CALUO43852 315 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 PPFIA2O75334 1257 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 ICAM1P05362 532 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 H2AFZP0C0S5 128 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 SMPD1P17405 629 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 CCND1P24385 295 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 SCTRP47872 440 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 PSEN1P49768 467 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 TRAF1Q13077 416 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 INF2Q27J81 1249 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 QRICH1Q2TAL8 776 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 HGSNATQ68CP4 663 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 KCTD16Q68DU8 428 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 H2AFVQ71UI9 128 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 PEX26Q7Z412 305 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 HEATR3Q7Z4Q2 680 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 ZNF467Q7Z7K2 595 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 GSPT2Q8IYD1 628 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 REXO1Q8N1G1 1221 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 TMEM199Q8N511 208 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 FAM133AQ8N9E0 248 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 CHST13Q8NET6 341 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 HDAC7Q8WUI4 952 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 UBLCP1Q8WVY7 318 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 RAD54LQ92698 747 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 N4BP2L2Q92802 583 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 CUL5Q93034 780 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 HVCN1Q96D96 273 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 SCLYQ96I15 445 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 RAB3IPQ96QF0 476 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 PIGSQ96S52 555 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 GAS2L1Q99501 681 aaPredicted RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.18□□□□□ -0.62
CHFR-219ENST00000541341 MAF1Q9H063 256 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 UPF3AQ9H1J1 476 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 CENPHQ9H3R5 247 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 NOP53Q9NZM5 478 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 FBXO40Q9UH90 709 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 RPL26L1Q9UNX3 145 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 NOC2LQ9Y3T9 749 aaKnown RBP11.18□□□□□ -0.62
CHFR-219ENST00000541341 DOCK5Q9H7D0 1870 aa11.18□□□□□ -0.62
CHFR-219ENST00000541341 TET1Q8NFU7 2136 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 MYO1FO00160 1098 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 KCNK3O14649 394 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 SLC16A3O15427 465 aaKnown RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 RAD51CO43502 376 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 CEP104O60308 925 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 PPP1R11O60927 126 aaPredicted RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 CST5P28325 142 aaPredicted RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 MAN1A1P33908 653 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 SKIV2L2P42285 1042 aaKnown RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 CLNS1AP54105 237 aaKnown RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 GFPT1Q06210 699 aaPredicted RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 EHHADHQ08426 723 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ZNF844Q08AG5 666 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ITGA7Q13683 1181 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ADGRE1Q14246 886 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ZRSR2Q15696 482 aaKnown RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 FSCN1Q16658 493 aaKnown RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 KRT71Q3SY84 523 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 FAM26FQ5R3K3 315 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 HYIQ5T013 277 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ERMARDQ5T6L9 678 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 DENND2CQ68D51 928 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 STXBP4Q6ZWJ1 553 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 SLFN11Q7Z7L1 901 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 CEP57Q86XR8 500 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ZC3H3Q8IXZ2 948 aaKnown RBP11.17□□□□□ -0.62
CHFR-219ENST00000541341 CCDC63Q8NA47 563 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 ERMNQ8TAM6 284 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 NEK9Q8TD19 979 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 MAIP1Q8WWC4 291 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 PIK3R5Q8WYR1 880 aa11.17□□□□□ -0.62
CHFR-219ENST00000541341 CCT6BQ92526 530 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms