RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 UROC1Q96N76 676 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 CASD1Q96PB1 797 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 TMEM175Q9BSA9 504 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 ANP32EQ9BTT0 268 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 APOL6Q9BWW8 343 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 PLVAPQ9BX97 442 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 RC3H2Q9HBD1 1191 aaKnown RBP19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 CNTN3Q9P232 1028 aa19.05■□□□□ 0.64
CLSTN3-210ENST00000540931 GNA14O95837 355 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 NR3C1P04150 777 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 RB1P06400 928 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 CCDC192P0DO97 292 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 AP3M2P53677 418 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 ADAM9Q13443 819 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 STX1AQ16623 288 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 ALKAL1Q6UXT8 129 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 DDX27Q96GQ7 796 aaKnown RBP19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 SNX27Q96L92 541 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 CEP63Q96MT8 703 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 PRDM6Q9NQX0 595 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 DMAC2Q9NW81 257 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 RWDD2AQ9UIY3 292 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 MAPK8IP1Q9UQF2 711 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 C2CD2Q9Y426 696 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 PCDHB12Q9Y5F1 795 aa19.04■□□□□ 0.64
CLSTN3-210ENST00000540931 FAM189A1O60320 539 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 FGFR1P11362 822 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 FOSL2P15408 326 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 CYP3A5P20815 502 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 IBSPP21815 317 aaPredicted RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 NR2F2P24468 414 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 AKAP5P24588 427 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 PSMC2P35998 433 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 MLH1P40692 756 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 ALDH7A1P49419 539 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 SNRNP35Q16560 246 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 ZCWPW2Q504Y3 356 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 CLLU1OSQ5K130 101 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 SPOUT1Q5T280 376 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 FAM117BQ6P1L5 589 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 BRSK2Q8IWQ3 736 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 CLP1Q92989 425 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 LPPQ93052 612 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 FNBP1Q96RU3 617 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 GAD1Q99259 594 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 CBWD1Q9BRT8 395 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 FAM213AQ9BRX8 229 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 PBX4Q9BYU1 374 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 RBAKQ9NYW8 714 aaPredicted RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 TMEM63CQ9P1W3 806 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 UBQLN1Q9UMX0 589 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 USP20Q9Y2K6 914 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 HES2Q9Y543 173 aa19.03■□□□□ 0.64
CLSTN3-210ENST00000540931 TTC26A0AVF1 554 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 PPP1R3GB7ZBB8 358 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 SLC16A3O15427 465 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 STX10O60499 249 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 ALDH2P05091 517 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 EPB41P11171 864 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 RPL9P32969 192 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 OSTNP61366 133 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 TUSC3Q13454 348 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 INTS8Q75QN2 995 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 SMYD4Q8IYR2 804 aaPredicted RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 NOC3LQ8WTT2 800 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 NELFBQ8WX92 580 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 TIFAQ96CG3 184 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 TGS1Q96RS0 853 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 RNF39Q9H2S5 420 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 METTL14Q9HCE5 456 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 TBC1D13Q9NVG8 400 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 INPP5FQ9Y2H2 1132 aa19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 R3HCC1Q9Y3T6 440 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-210ENST00000540931 SMIM28A0A1B0GU29 152 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 CLIC2O15247 247 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 KRT13P13646 458 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 DNAJB2P25686 324 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 ACOT2P49753 483 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 CYP2J2P51589 502 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 BMS1Q14692 1282 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 SLC10A6Q3KNW5 377 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 ISM2Q6H9L7 571 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 BEST2Q8NFU1 509 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 HAPLN2Q9GZV7 340 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 PCIF1Q9H4Z3 704 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 RNF19AQ9NV58 838 aa19.01■□□□□ 0.63
CLSTN3-210ENST00000540931 IKBKBO14920 756 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 CXCL8P10145 99 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 BMP6P22004 513 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 ENOX2Q16206 610 aaKnown RBP19■□□□□ 0.63
CLSTN3-210ENST00000540931 TPD52L1Q16890 204 aaPredicted RBP19■□□□□ 0.63
CLSTN3-210ENST00000540931 PPP2R2DQ66LE6 453 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 KLHL10Q6JEL2 608 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 FILIP1Q7Z7B0 1213 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 FAM114A1Q8IWE2 563 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 CEP120Q8N960 986 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 TMC2Q8TDI7 906 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 SAAL1Q96ER3 474 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 MFSD14AQ96MC6 490 aa19■□□□□ 0.63
CLSTN3-210ENST00000540931 ZNF558Q96NG5 402 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms