RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 LIG4P49917 911 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 SMAD1Q15797 465 aaKnown RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 TTC27Q6P3X3 843 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 NAF1Q96HR8 494 aaKnown RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 SERPINB12Q96P63 405 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 A1CFQ9NQ94 594 aaKnown RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 DUOX1Q9NRD9 1551 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 I3L4J1 428 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 PPEF1O14829 653 aaPredicted RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 DDX3YO15523 660 aaKnown RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 GGPS1O95749 300 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 MAGEA4P43358 317 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 NOP14P78316 857 aaKnown RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 BRDTQ58F21 947 aaPredicted RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 CDC42EP5Q6NZY7 148 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 TMEM270Q6UE05 265 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 TTC1Q99614 292 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 SLCO1B3Q9NPD5 702 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 MYH7P12883 1935 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 PPIP5K2O43314 1243 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 TTC4O95801 387 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 MT-ND3P03897 115 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 SKIP12755 728 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 KRT10P13645 584 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 HSPA1LP34931 641 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 CRKP46108 304 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 UBAP2Q5T6F2 1119 aaKnown RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 SPDYE1Q8NFV5 336 aaPredicted RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 ZWILCHQ9H900 591 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 RXFP1Q9HBX9 757 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 TMEM59LQ9UK28 342 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 MRPL11Q9Y3B7 192 aaKnown RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 TMEM150BA6NC51 233 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 SRRM3A6NNA2 597 aaPredicted RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 TGFB1I1O43294 461 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 NUDT17P0C025 328 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 EPHB2P29323 1055 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 DCAF12L1Q5VU92 463 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 BSPRYQ5W0U4 402 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 CEP128Q6ZU80 1094 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 BZW1Q7L1Q6 419 aaKnown RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 CBWD2Q8IUF1 395 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 RASGEF1CQ8N431 466 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 DCAF4Q8WV16 495 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 MAK16Q9BXY0 300 aaKnown RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 TOPORSQ9NS56 1045 aaPredicted RBP13.78□□□□□ -0.2
MSH6-210ENST00000540021 AKAP11Q9UKA4 1901 aa13.78□□□□□ -0.2
MSH6-210ENST00000540021 TLR3O15455 904 aaKnown RBP13.77□□□□□ -0.2
MSH6-210ENST00000540021 MGRN1O60291 552 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 HAUS5O94927 633 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 PHBP35232 272 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 KRT39Q6A163 491 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 BTNL9Q6UXG8 535 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 ZNF720Q7Z2F6 126 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 TLCD1Q96CP7 247 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 NEU2Q9Y3R4 380 aa13.77□□□□□ -0.2
MSH6-210ENST00000540021 CCDC195A0A1B0GUA6 201 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 BBOX1O75936 387 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 RRP1BQ14684 758 aaKnown RBP13.77□□□□□ -0.21
MSH6-210ENST00000540021 LRRC36Q1X8D7 754 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 CEP55Q53EZ4 464 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 LACTB2Q53H82 288 aaPredicted RBP13.77□□□□□ -0.21
MSH6-210ENST00000540021 CENPUQ71F23 418 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 CYFIP1Q7L576 1253 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 PTF1AQ7RTS3 328 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 CHURC1Q8WUH1 139 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 CENPTQ96BT3 561 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 IWS1Q96ST2 819 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 MYLK2Q9H1R3 596 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 STOML1Q9UBI4 398 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 POLLQ9UGP5 575 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 MARF1Q9Y4F3 1742 aaKnown RBP13.77□□□□□ -0.21
MSH6-210ENST00000540021 DENND3A2RUS2 1198 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 BTNL10A8MVZ5 291 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 INHBAP08476 426 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 SPATA31C1P0DKV0 1188 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 RHBDL3P58872 404 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 LLGL2Q6P1M3 1020 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 LVRNQ6Q4G3 990 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 NOP9Q86U38 636 aaKnown RBP13.77□□□□□ -0.21
MSH6-210ENST00000540021 ARHGAP24Q8N264 748 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 FITM2Q8N6M3 262 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 C1orf131Q8NDD1 294 aaKnown RBP13.77□□□□□ -0.21
MSH6-210ENST00000540021 DNAJC9Q8WXX5 260 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 SPOCK2Q92563 424 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 CEP170P1Q96L14 293 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 RMDN2Q96LZ7 410 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 FAM161BQ96MY7 647 aa13.77□□□□□ -0.21
MSH6-210ENST00000540021 CNOT7Q9UIV1 285 aaKnown RBP13.77□□□□□ -0.21
MSH6-210ENST00000540021 RRM1P23921 792 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 IRX1P78414 480 aaPredicted RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 SATB1Q01826 763 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 STAT4Q14765 748 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 ZFPM1Q8IX07 1006 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 TRIM55Q9BYV6 548 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 PPARGC1AQ9UBK2 798 aaKnown RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 SEL1LQ9UBV2 794 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 LRRIQ4A6NIV6 560 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 KRT19P08727 400 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms