RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TARBP2Q15633 366 aaKnown RBP9.04□□□□□ -0.96
NEDD8-207ENST00000533242 ELF2Q15723 593 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 LETM2Q2VYF4 491 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 TOGARAM2Q6ZUX3 1019 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 KIF18AQ8NI77 898 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 FEZF2Q8TBJ5 459 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 ATRIPQ8WXE1 791 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 VN1R3Q9BXE9 311 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 MORC2Q9Y6X9 1032 aaPredicted RBP9.04□□□□□ -0.96
NEDD8-207ENST00000533242 M0R2N6 131 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 CBFA2T2O43439 604 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 ZNF623O75123 536 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 KLRC2P26717 231 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 SLC11A1P49279 550 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 RNASELQ05823 741 aaKnown RBP9.04□□□□□ -0.96
NEDD8-207ENST00000533242 NR1I3Q14994 352 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 PRR16Q569H4 304 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 TRIML1Q8N9V2 468 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 LPPQ93052 612 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 PGBD4Q96DM1 585 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 TMEM175Q9BSA9 504 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 INO80BQ9C086 356 aaPredicted RBP9.04□□□□□ -0.96
NEDD8-207ENST00000533242 TMEM60Q9H2L4 133 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 L2HGDHQ9H9P8 463 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 C6orf50Q9HD87 102 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 DISC1Q9NRI5 854 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 FAM105AQ9NUU6 356 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 HOOK1Q9UJC3 728 aaKnown RBP9.04□□□□□ -0.96
NEDD8-207ENST00000533242 MIA3Q5JRA6 1907 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 SPTBN4Q9H254 2564 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 LILRB3O75022 631 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 CDK11BP21127 795 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 SFNP31947 248 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 JAK3P52333 1124 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 KMT5BQ4FZB7 885 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 TWF2Q6IBS0 349 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 ELMSAN1Q6PJG2 1045 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DGLUCYQ7Z3D6 616 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 ZNF410Q86VK4 478 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 REXO1Q8N1G1 1221 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 URGCPQ8TCY9 931 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 CCDC12Q8WUD4 166 aaPredicted RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 NXPE3Q969Y0 559 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 RMDN1Q96DB5 314 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DESI2Q9BSY9 194 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 HERC2P3Q9BVR0 1158 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 NIFKQ9BYG3 293 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 ZMYND12Q9H0C1 365 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 EPS15L1Q9UBC2 864 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DNAI1Q9UI46 699 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 INPP5FQ9Y2H2 1132 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 PTPRZ1P23471 2315 aaPredicted RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DOCK8Q8NF50 2099 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 A0A1B0GTH6 734 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 MED19A0JLT2 244 aaPredicted RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 NARSO43776 548 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 CNPP09543 421 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 RFX1P22670 979 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DNM2P50570 870 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 SYCP1Q15431 976 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 UGCGQ16739 394 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 CDKAL1Q5VV42 579 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 SPECC1LQ69YQ0 1117 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 PHLDB3Q6NSJ2 640 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 BLIDQ8IZY5 108 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 FAM177A1Q8N128 213 aaPredicted RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 RDM1Q8NG50 284 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 LENG9Q96B70 501 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 RIT2Q99578 217 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 MRPL17Q9NRX2 175 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DNAJB4Q9UDY4 337 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 DPP7Q9UHL4 492 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 MAPK8IP1Q9UQF2 711 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 SSX2IPQ9Y2D8 614 aa9.03□□□□□ -0.96
NEDD8-207ENST00000533242 TDRD15B5MCY1 1934 aaKnown RBP9.03□□□□□ -0.96
NEDD8-207ENST00000533242 PATJQ8NI35 1801 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 A0A087WZ62 844 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 IGKV6-21A0A0C4DH24 114 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 KRBA1A5PL33 1030 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 STK25O00506 426 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 PAPLNO95428 1278 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 CFHP08603 1231 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SRFP11831 508 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 ERCC5P28715 1186 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 ETF1P62495 437 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 DRP2Q13474 957 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 PUM1Q14671 1186 aaKnown RBP eCLIP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 KARSQ15046 597 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 ERCC6LQ2NKX8 1250 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 FBXO38Q6PIJ6 1188 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 ZC3H14Q6PJT7 736 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SLC5A5Q92911 643 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 WDR24Q96S15 920 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 CEP89Q96ST8 783 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 FDXACB1Q9BRP7 624 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 TEKT3Q9BXF9 490 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 GBP3Q9H0R5 595 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 TBC1D17Q9HA65 648 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 BRMS1Q9HCU9 246 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 WDR6Q9NNW5 1121 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms