RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CHFRQ96EP1 664 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 ZNF512Q96ME7 567 aaPredicted RBP5.34□□□□□ -1.55
CD44-235ENST00000532339 SOX7Q9BT81 388 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.34□□□□□ -1.55
CD44-235ENST00000532339 NMRK2Q9NPI5 230 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 MSRAQ9UJ68 235 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 PCDHB6Q9Y5E3 794 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 LRRIQ1Q96JM4 1722 aa5.34□□□□□ -1.56
CD44-235ENST00000532339 XDHP47989 1333 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 SPATA31A1Q5TZJ5 1347 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 GOLGA6L6A8MZA4 724 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 ELL2O00472 640 aaPredicted RBP5.33□□□□□ -1.56
CD44-235ENST00000532339 TGM5O43548 720 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 CDC45O75419 566 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 TSPY4P0CV99 314 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 TSPY10P0CW01 314 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 GAAP10253 952 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 SCNN1BP51168 640 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 RABGGTBP53611 331 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 INHBCP55103 352 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 CRB2Q5IJ48 1285 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 ELOA2Q8IYF1 753 aaPredicted RBP5.33□□□□□ -1.56
CD44-235ENST00000532339 CDYL2Q8N8U2 506 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 SMC1BQ8NDV3 1235 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 MDGA1Q8NFP4 955 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 PPP1R14CQ8TAE6 165 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 ATXN2LQ8WWM7 1075 aaKnown RBP5.33□□□□□ -1.56
CD44-235ENST00000532339 GCC1Q96CN9 775 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 CLIP3Q96DZ5 547 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 FEZ1Q99689 392 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 SLC2A4RGQ9NR83 387 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 PLAAQ9Y263 795 aa5.33□□□□□ -1.56
CD44-235ENST00000532339 KLRG2A4D1S0 409 aaPredicted RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 ENPP3O14638 875 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 NRP2O60462 931 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 HSP90B1P14625 803 aaKnown RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 GNAT2P19087 354 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 LSP1P33241 339 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 PHC1P78364 1004 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 TOB2Q14106 344 aaPredicted RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 PCBP1Q15365 356 aaKnown RBP eCLIP5.32□□□□□ -1.56
CD44-235ENST00000532339 HTR3DQ70Z44 454 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 APBB1IPQ7Z5R6 666 aaPredicted RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 C11orf74Q86VG3 221 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 DHX37Q8IY37 1157 aaKnown RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 MB21D1Q8N884 522 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 OR2W6PQ8NHA6 318 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 ST8SIA2Q92186 375 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 LARP4BQ92615 738 aaKnown RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 MFSD3Q96ES6 412 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 GPR101Q96P66 508 aaPredicted RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 CEP89Q96ST8 783 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 MNTQ99583 582 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 TARS2Q9BW92 718 aaKnown RBP5.32□□□□□ -1.56
CD44-235ENST00000532339 KRTAP17-1Q9BYP8 105 aa5.32□□□□□ -1.56
CD44-235ENST00000532339 CCDC144AA2RUR9 1427 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 SBNO2Q9Y2G9 1366 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 ANKRD62A6NC57 917 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 ALDH1A2O94788 518 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 PFKMP08237 780 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 XPAP23025 273 aaPredicted RBP5.31□□□□□ -1.56
CD44-235ENST00000532339 HSD3B2P26439 372 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 PTGS2P35354 604 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 LSSP48449 732 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 GPR15P49685 360 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 LBX1P52954 281 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 SLC25A3Q00325 362 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 CD69Q07108 199 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 TXNRD1Q16881 649 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 CCDC178Q5BJE1 867 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 DCAF17Q5H9S7 520 aaPredicted RBP5.31□□□□□ -1.56
CD44-235ENST00000532339 ZBTB41Q5SVQ8 909 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 ZNF610Q8N9Z0 462 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 PIK3C3Q8NEB9 887 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 ZNF496Q96IT1 587 aaPredicted RBP5.31□□□□□ -1.56
CD44-235ENST00000532339 PRRX2Q99811 253 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 IKZF4Q9H2S9 585 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.31□□□□□ -1.56
CD44-235ENST00000532339 ING3Q9NXR8 418 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 USP18Q9UMW8 372 aa5.31□□□□□ -1.56
CD44-235ENST00000532339 KIF15Q9NS87 1388 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 A0A087X1B8 175 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 OVOL3O00110 214 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 LY86O95711 162 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 NRG3P56975 720 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 IL2P60568 153 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 SEPT7Q16181 437 aaKnown RBP5.3□□□□□ -1.56
CD44-235ENST00000532339 RABL3Q5HYI8 236 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 NAIF1Q69YI7 327 aaPredicted RBP5.3□□□□□ -1.56
CD44-235ENST00000532339 FRMD7Q6ZUT3 714 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 LDLRAD3Q86YD5 345 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 PGBD4Q96DM1 585 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 ENKD1Q9H0I2 346 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 WNT8AQ9H1J5 351 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 EPC1Q9H2F5 836 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 SPTLC3Q9NUV7 552 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.3□□□□□ -1.56
CD44-235ENST00000532339 A0A0C4DFX4 3053 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 TNS3Q68CZ2 1445 aa5.3□□□□□ -1.56
CD44-235ENST00000532339 C10orf71Q711Q0 1435 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms