RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GGCXP38435 758 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 RBM25P49756 843 aaKnown RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 GNAQP50148 359 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 NOVA1P51513 510 aaKnown RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 SETQ01105 290 aaPredicted RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 DSC1Q08554 894 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 AP3B2Q13367 1082 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 CCDC6Q16204 474 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 UGCGQ16739 394 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 PPM1LQ5SGD2 360 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 WWC2Q6AWC2 1192 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 PPP1R18Q6NYC8 613 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 CEP68Q76N32 757 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 MRPL10Q7Z7H8 261 aaKnown RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 ZNF410Q86VK4 478 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 LONP2Q86WA8 852 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 GPR65Q8IYL9 337 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 LSM14BQ9BX40 385 aaKnown RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 PLA2G2FQ9BZM2 168 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 KANSL3Q9P2N6 904 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 PCDHA10Q9Y5I2 948 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 TAF6LQ9Y6J9 622 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 CNTNAP5Q8WYK1 1306 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 LAMA5O15230 3695 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 ASCC3Q8N3C0 2202 aaKnown RBP9.23□□□□□ -0.93
CD44-232ENST00000531118 LOC400499M0QZD8 3231 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 WDR64B1ANS9 1081 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 K7ESF4 209 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 HIP1O00291 1037 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 XYLBO75191 536 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 ZIC2O95409 532 aaPredicted RBP9.23□□□□□ -0.93
CD44-232ENST00000531118 FOSP01100 380 aaPredicted RBP9.23□□□□□ -0.93
CD44-232ENST00000531118 CYP21A2P08686 494 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 RXRAP19793 462 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 FCARP24071 287 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 ZNF76P36508 570 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 MLH1P40692 756 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 CXCL12P48061 93 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 ADCY7P51828 1080 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 NAPAP54920 295 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 GAS6Q14393 721 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 GRM2Q14416 872 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 USP41Q3LFD5 358 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 PABPC1LQ4VXU2 614 aaKnown RBP9.23□□□□□ -0.93
CD44-232ENST00000531118 UBXN11Q5T124 520 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 TMTC3Q6ZXV5 915 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 MB21D2Q8IYB1 491 aaPredicted RBP9.23□□□□□ -0.93
CD44-232ENST00000531118 NCOA7Q8NI08 942 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 ZNF577Q9BSK1 485 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 GPR62Q9BZJ7 368 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 INO80BQ9C086 356 aaPredicted RBP9.23□□□□□ -0.93
CD44-232ENST00000531118 SLC6A16Q9GZN6 736 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 ARRDC1-AS1Q9H2J1 176 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 RIC8AQ9NPQ8 531 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 HCFC1R1Q9NWW0 138 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 KCNH3Q9ULD8 1083 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 POLIQ9UNA4 740 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 ACACAQ13085 2346 aa9.23□□□□□ -0.93
CD44-232ENST00000531118 NBEAQ8NFP9 2946 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 DMXL2Q8TDJ6 3036 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 KIF26AQ9ULI4 1882 aaPredicted RBP9.22□□□□□ -0.93
CD44-232ENST00000531118 GIPC1O14908 333 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 ZNF806P0C7X5 589 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 SCNN1GP51170 649 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 TARBP2Q15633 366 aaKnown RBP9.22□□□□□ -0.93
CD44-232ENST00000531118 MTERF2Q49AM1 385 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 RTP2Q5QGT7 225 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 HEATR6Q6AI08 1181 aaKnown RBP9.22□□□□□ -0.93
CD44-232ENST00000531118 PRSS55Q6UWB4 352 aaPredicted RBP9.22□□□□□ -0.93
CD44-232ENST00000531118 TEX2Q8IWB9 1127 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 SPEM1Q8N4L4 309 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 SLC7A14Q8TBB6 771 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 IGDCC4Q8TDY8 1250 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 FAM3CQ92520 227 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 NLRP4Q96MN2 994 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 SMOC1Q9H4F8 434 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 LMAN1LQ9HAT1 526 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 TBC1D22BQ9NU19 505 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 SAMM50Q9Y512 469 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 PIAS3Q9Y6X2 628 aa9.22□□□□□ -0.93
CD44-232ENST00000531118 APC2O95996 2303 aa9.21□□□□□ -0.93
CD44-232ENST00000531118 IGKV6-21A0A0C4DH24 114 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 E7EWF7 191 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 AXIN1O15169 862 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 TOP3BO95985 862 aaKnown RBP9.21□□□□□ -0.94
CD44-232ENST00000531118 CHRNB1P11230 501 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 CEBPBP17676 345 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 CDC42EP1Q00587 391 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 QPCTQ16769 361 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 SLC5A9Q2M3M2 681 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 PLA2G2CQ5R387 149 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 RNF43Q68DV7 783 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 TANGO2Q6ICL3 276 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 Q6ZS52 159 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 WDR5BQ86VZ2 330 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 RAB11FIP4Q86YS3 637 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 RHPN2Q8IUC4 686 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 SMG8Q8ND04 991 aaKnown RBP9.21□□□□□ -0.94
CD44-232ENST00000531118 CRYGNQ8WXF5 182 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 ELSPBP1Q96BH3 223 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms