RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 RHBDL3P58872 404 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 IGBP1P78318 339 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 NUCB2P80303 420 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 EXOSC10Q01780 885 aaKnown RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 MGAT5Q09328 741 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 DCTN1Q14203 1278 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 SLC5A9Q2M3M2 681 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 LCE4AQ5TA78 99 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 MBNL2Q5VZF2 373 aaKnown RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 AP1ARQ63HQ0 302 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 FAM180AQ6UWF9 173 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 GET4Q7L5D6 327 aaPredicted RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 SDCCAG8Q86SQ7 713 aaPredicted RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 CMTM4Q8IZR5 234 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 KRT222Q8N1A0 295 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 ANKRD53Q8N9V6 530 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 DRAXINQ8NBI3 349 aaPredicted RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 TSPEARQ8WU66 669 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 C17orf50Q8WW18 174 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 TCP11Q8WWU5 503 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 ZNF396Q96N95 335 aaPredicted RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 GPHA2Q96T91 129 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 ARPC5LQ9BPX5 153 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 IFT122Q9HBG6 1241 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 IL23AQ9NPF7 189 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 DNAJC28Q9NX36 388 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 DPP7Q9UHL4 492 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 TRHDEQ9UKU6 1024 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 THRAP3Q9Y2W1 955 aaKnown RBP6.41□□□□□ -1.38
CD44-231ENST00000531110 COMMD10Q9Y6G5 202 aa6.41□□□□□ -1.38
CD44-231ENST00000531110 SHTN1A0MZ66 631 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 PES1O00541 588 aaKnown RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 FOXS1O43638 330 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 ZNF623O75123 536 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 TMEM127O75204 238 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 PPFIA4O75335 1185 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 GASTP01350 101 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 AGXTP21549 392 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 ALDH1B1P30837 517 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 CCT2P78371 535 aaKnown RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 ITKQ08881 620 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 FOXD4Q12950 439 aaPredicted RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 IFT88Q13099 833 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 SAFB2Q14151 953 aaKnown RBP eCLIP6.4□□□□□ -1.38
CD44-231ENST00000531110 ADRM1Q16186 407 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 KRT40Q6A162 431 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 LEKR1Q6ZMV7 388 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 FUKQ8N0W3 1084 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 ACRBPQ8NEB7 543 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 C1orf162Q8NEQ5 155 aaPredicted RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 SMCR8Q8TEV9 937 aaPredicted RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 SNX33Q8WV41 574 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 EDAQ92838 391 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 TNPO1Q92973 898 aaKnown RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 TEKT1Q969V4 418 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 GNRHR2Q96P88 292 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 SENP7Q9BQF6 1050 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 ENKD1Q9H0I2 346 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 QRSL1Q9H0R6 528 aaKnown RBP6.4□□□□□ -1.38
CD44-231ENST00000531110 SMPD4Q9NXE4 827 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 JAG2Q9Y219 1238 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 GPR45Q9Y5Y3 372 aa6.4□□□□□ -1.38
CD44-231ENST00000531110 CEP162Q5TB80 1403 aa6.4□□□□□ -1.39
CD44-231ENST00000531110 CEP164Q9UPV0 1460 aa6.4□□□□□ -1.39
CD44-231ENST00000531110 A0A1W2PRX2 142 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 GABRDO14764 452 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 CT47B1P0C2W7 299 aaPredicted RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 CCDC159P0C7I6 412 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 GYPEP15421 78 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 COMTP21964 271 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 MAGEA9P43362 315 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 MAGEA10P43363 369 aaPredicted RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 SELENOPP49908 381 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 SRSF2Q01130 221 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 POU5F1Q01860 360 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 MALLQ13021 153 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 GRM7Q14831 915 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 MFSD5Q6N075 450 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 IQCF2Q8IXL9 164 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 PDILTQ8N807 584 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 GLB1L3Q8NCI6 653 aaPredicted RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 TDRD7Q8NHU6 1098 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 CCDC26Q8TAB7 109 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 Q8TCH9 128 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 TGFBRAP1Q8WUH2 860 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 CHMP4CQ96CF2 233 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 CDK5RAP1Q96SZ6 601 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 PANK2Q9BZ23 570 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 C22orf23Q9BZE7 217 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 ASPSCR1Q9BZE9 553 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 GREM2Q9H772 168 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 AGO3Q9H9G7 860 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 METTL14Q9HCE5 456 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 PLA2G3Q9NZ20 509 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 EDARQ9UNE0 448 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 RPTORQ8N122 1335 aa6.39□□□□□ -1.39
CD44-231ENST00000531110 RRBP1Q9P2E9 1410 aaKnown RBP6.39□□□□□ -1.39
CD44-231ENST00000531110 KATNA1O75449 491 aa6.38□□□□□ -1.39
CD44-231ENST00000531110 SKILP12757 684 aa6.38□□□□□ -1.39
CD44-231ENST00000531110 CTSSP25774 331 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms