RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CNTNAP2Q9UHC6 1331 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 EDN1P05305 212 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 UCHL3P15374 230 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 POU5F1Q01860 360 aaKnown RBP22.96■■□□□ 1.27
VPS28-212ENST00000530836 PPP3CAQ08209 521 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 SURF1Q15526 300 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 KYAT1Q16773 422 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 TMEM132AQ24JP5 1023 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 C1orf220Q5T0J3 134 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 MFSD5Q6N075 450 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 PDXDC1Q6P996 788 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 RSPH3Q86UC2 560 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 CCAR2Q8N163 923 aaKnown RBP22.96■■□□□ 1.27
VPS28-212ENST00000530836 EHBP1Q8NDI1 1231 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 BADQ92934 168 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 FNBP1Q96RU3 617 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 HAPLN2Q9GZV7 340 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 FAM49AQ9H0Q0 323 aaPredicted RBP22.96■■□□□ 1.27
VPS28-212ENST00000530836 WNT8AQ9H1J5 351 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 RRAGDQ9NQL2 400 aaPredicted RBP22.96■■□□□ 1.27
VPS28-212ENST00000530836 USP20Q9Y2K6 914 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 PDE4DIPQ5VU43 2346 aa22.96■■□□□ 1.27
VPS28-212ENST00000530836 LRRIQ3A6PVS8 624 aaPredicted RBP22.95■■□□□ 1.26
VPS28-212ENST00000530836 SELPP16109 830 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 NCBP1Q09161 790 aaKnown RBP22.95■■□□□ 1.26
VPS28-212ENST00000530836 ZNF618Q5T7W0 954 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 E4F1Q66K89 784 aaPredicted RBP22.95■■□□□ 1.26
VPS28-212ENST00000530836 DPY19L2P1Q6NXN4 242 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 CCDC170Q8IYT3 715 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 PLEKHO2Q8TD55 490 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 CCDC127Q96BQ5 260 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 ADAMTS10Q9H324 1103 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 MINDY3Q9H8M7 445 aa22.95■■□□□ 1.26
VPS28-212ENST00000530836 RBAKQ9NYW8 714 aaPredicted RBP22.95■■□□□ 1.26
VPS28-212ENST00000530836 LRRC53A6NM62 1247 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 ABLIM1O14639 778 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 ERLIN2O94905 339 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 IQCF3P0C7M6 154 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 GCLMP48507 274 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 CCL23P55773 120 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 WDR59Q6PJI9 974 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 TRAF7Q6Q0C0 670 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 CRELD2Q6UXH1 353 aaPredicted RBP22.94■■□□□ 1.26
VPS28-212ENST00000530836 APBB1IPQ7Z5R6 666 aaPredicted RBP22.94■■□□□ 1.26
VPS28-212ENST00000530836 LBHD1Q9BQE6 289 aaPredicted RBP22.94■■□□□ 1.26
VPS28-212ENST00000530836 TMEM117Q9H0C3 514 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 INTS2Q9H0H0 1204 aaKnown RBP22.94■■□□□ 1.26
VPS28-212ENST00000530836 COQ4Q9Y3A0 265 aa22.94■■□□□ 1.26
VPS28-212ENST00000530836 GOLGA6L9A6NEM1 432 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 SOWAHDA6NJG2 315 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 ACOT2P49753 483 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 AP3M2P53677 418 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 AMHR2Q16671 573 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 ZNF568Q3ZCX4 644 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 EPC2Q52LR7 807 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 SFMBT2Q5VUG0 894 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 LRRC8DQ7L1W4 858 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 TMEM199Q8N511 208 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 SPAG5Q96R06 1193 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 SIX2Q9NPC8 291 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 NLRC4Q9NPP4 1024 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 TRIP12Q14669 1992 aaPredicted RBP22.93■■□□□ 1.26
VPS28-212ENST00000530836 GPR32O75388 356 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 MCF2P10911 925 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 CYLC1P35663 651 aaPredicted RBP22.93■■□□□ 1.26
VPS28-212ENST00000530836 FAM26DQ5JW98 314 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 BRSK2Q8IWQ3 736 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 ZNF668Q96K58 619 aaPredicted RBP22.93■■□□□ 1.26
VPS28-212ENST00000530836 AIPL1Q9NZN9 384 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 APEX2Q9UBZ4 518 aa22.93■■□□□ 1.26
VPS28-212ENST00000530836 CEP290O15078 2479 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 TTLL13PA6NNM8 815 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 FAM189A1O60320 539 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 CCDC175P0C221 793 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 DLATP10515 647 aaKnown RBP22.92■■□□□ 1.26
VPS28-212ENST00000530836 ACTN1P12814 892 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 KIZQ2M2Z5 673 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 C17orf53Q8N3J3 647 aaPredicted RBP22.92■■□□□ 1.26
VPS28-212ENST00000530836 FBXL13Q8NEE6 735 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 LMO3Q8TAP4 145 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 SCLYQ96I15 445 aa22.92■■□□□ 1.26
VPS28-212ENST00000530836 B4GALT5O43286 388 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 PARNO95453 639 aaKnown RBP22.91■■□□□ 1.26
VPS28-212ENST00000530836 CHRNA1P02708 482 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 MAGEA10P43363 369 aaPredicted RBP22.91■■□□□ 1.26
VPS28-212ENST00000530836 RAD9BQ6WBX8 426 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 ZBTB33Q86T24 672 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 FAM81BQ96LP2 452 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 CGRRF1Q99675 332 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 ADPGKQ9BRR6 497 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 STK33Q9BYT3 514 aa22.91■■□□□ 1.26
VPS28-212ENST00000530836 CPSF3Q9UKF6 684 aaKnown RBP22.91■■□□□ 1.26
VPS28-212ENST00000530836 BZW2Q9Y6E2 419 aaKnown RBP22.91■■□□□ 1.26
VPS28-212ENST00000530836 EPN1Q9Y6I3 576 aaPredicted RBP22.91■■□□□ 1.26
VPS28-212ENST00000530836 SSU72P8A0A1W2PR75 194 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 ZC3H11AO75152 810 aaKnown RBP eCLIP22.9■■□□□ 1.267e-6■■■■■ 33.7
VPS28-212ENST00000530836 TUBB4AP04350 444 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CTSHP09668 335 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 HARSP12081 509 aaKnown RBP22.9■■□□□ 1.26
VPS28-212ENST00000530836 DARSP14868 501 aaKnown RBP22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms