RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 IQCEQ6IPM2 695 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 SLC27A1Q6PCB7 646 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 C15orf39Q6ZRI6 1047 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 WDR49Q8IV35 697 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 C17orf53Q8N3J3 647 aaPredicted RBP22.75■■□□□ 1.23
VPS28-208ENST00000527797 RNF208Q9H0X6 261 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 RAB20Q9NX57 234 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 DNAJC12Q9UKB3 198 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 MYO6Q9UM54 1294 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 C4BPAP04003 597 aaKnown RBP22.74■■□□□ 1.23
VPS28-208ENST00000527797 CCL5P13501 91 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 THPOP40225 353 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 RAPGEF1Q13905 1077 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 MTFR1Q15390 333 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 ZACNQ401N2 412 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 GJB7Q6PEY0 223 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 TAS1R2Q8TE23 839 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 SEMA4DQ92854 862 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 DEFB118Q96PH6 123 aa22.74■■□□□ 1.23
VPS28-208ENST00000527797 TRMT13Q9NUP7 481 aaKnown RBP22.74■■□□□ 1.23
VPS28-208ENST00000527797 DNM1LO00429 736 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 NPTXRO95502 500 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 BIRC3Q13489 604 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 RAD9BQ6WBX8 426 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 SLC43A3Q8NBI5 491 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 CHP1Q99653 195 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 SEZ6LQ9BYH1 1024 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 PIN4Q9Y237 131 aaKnown RBP22.73■■□□□ 1.23
VPS28-208ENST00000527797 PTPRJQ12913 1337 aa22.73■■□□□ 1.23
VPS28-208ENST00000527797 B4GALT4O60513 344 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 CHRNA1P02708 482 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 CTSHP09668 335 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 CXCL8P10145 99 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 GRM5P41594 1212 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 PHLDB3Q6NSJ2 640 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 CTU1Q7Z7A3 348 aaKnown RBP22.72■■□□□ 1.23
VPS28-208ENST00000527797 TMEM192Q8IY95 271 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 ACAP3Q96P50 834 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 STK33Q9BYT3 514 aa22.72■■□□□ 1.23
VPS28-208ENST00000527797 SENP6Q9GZR1 1112 aaPredicted RBP22.72■■□□□ 1.23
VPS28-208ENST00000527797 NOC2LQ9Y3T9 749 aaKnown RBP22.72■■□□□ 1.23
VPS28-208ENST00000527797 MGAT3Q09327 533 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 MTF1Q14872 753 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 TDRD10Q5VZ19 366 aaKnown RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 E4F1Q66K89 784 aaPredicted RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 OR5B17Q8NGF7 314 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 CCDC94Q9BW85 323 aaPredicted RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 UBE2TQ9NPD8 197 aaPredicted RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 KCND1Q9NSA2 647 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 AIPL1Q9NZN9 384 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 AJAP1Q9UKB5 411 aaPredicted RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 TRIP12Q14669 1992 aaPredicted RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 ARVCFO00192 962 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 ZC3H11AO75152 810 aaKnown RBP eCLIP22.71■■□□□ 1.237e-6■■■■■ 33.7
VPS28-208ENST00000527797 PHACTR2O75167 634 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 LRRN2O75325 713 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 RPS6KA5O75582 802 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 JAM2P57087 298 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 ASIC2Q16515 512 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 DUOXA2Q1HG44 320 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 FAM228AQ86W67 206 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 CCAR2Q8N163 923 aaKnown RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 DHX38Q92620 1227 aaKnown RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 FAM84AQ96KN4 292 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 NT5C1BQ96P26 610 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 TRIM6Q9C030 488 aaPredicted RBP22.71■■□□□ 1.23
VPS28-208ENST00000527797 ASB7Q9H672 318 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 OGDHLQ9ULD0 1010 aa22.71■■□□□ 1.23
VPS28-208ENST00000527797 MROH7Q68CQ1 1323 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 LACTBL1A8MY62 500 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 CCP110O43303 1012 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 HLA-DRAP01903 254 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 HSPA8P11142 646 aaKnown RBP22.7■■□□□ 1.22
VPS28-208ENST00000527797 STAT1P42224 750 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 PIK3CAP42336 1068 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 WDR44Q5JSH3 913 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 TOGARAM2Q6ZUX3 1019 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 ARHGEF19Q8IW93 802 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 CD302Q8IX05 232 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 CCDC170Q8IYT3 715 aa22.7■■□□□ 1.22
VPS28-208ENST00000527797 EIF2AQ9BY44 585 aaKnown RBP22.7■■□□□ 1.22
VPS28-208ENST00000527797 NHEJ1Q9H9Q4 299 aaPredicted RBP22.7■■□□□ 1.22
VPS28-208ENST00000527797 CAND2O75155 1236 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 SERPING1P05155 500 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 TMEM191BP0C7N4 346 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 TFAMQ00059 246 aaKnown RBP22.69■■□□□ 1.22
VPS28-208ENST00000527797 DRAP1Q14919 205 aaPredicted RBP22.69■■□□□ 1.22
VPS28-208ENST00000527797 TRIM71Q2Q1W2 868 aaKnown RBP22.69■■□□□ 1.22
VPS28-208ENST00000527797 SLC10A6Q3KNW5 377 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 FMNL3Q8IVF7 1028 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 ANKRD36BP1Q96IX9 119 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 TRPV6Q9H1D0 765 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 SPTLC3Q9NUV7 552 aa22.69■■□□□ 1.22
VPS28-208ENST00000527797 TRMT1Q9NXH9 659 aaKnown RBP22.69■■□□□ 1.22
VPS28-208ENST00000527797 GPR182O15218 404 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 ZSCAN12O43309 604 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 VNN1O95497 513 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 TNNC2P02585 160 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 CYLC1P35663 651 aaPredicted RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 MFAP3P55082 362 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms