RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 OSTNP61366 133 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 DSC1Q08554 894 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 ZBTB41Q5SVQ8 909 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 XXYLT1Q8NBI6 393 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 TMEM175Q9BSA9 504 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 PLVAPQ9BX97 442 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 ASB7Q9H672 318 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 AAASQ9NRG9 546 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 KLK14Q9P0G3 267 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 MAPK8IP1Q9UQF2 711 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 CHD9Q3L8U1 2897 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 C5orf67F2Z3F1 127 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 MEFVO15553 781 aaPredicted RBP22.58■■□□□ 1.21
CD44-222ENST00000526025 ARHGEF15O94989 841 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 RB1P06400 928 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 THP07101 528 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 CXCL8P10145 99 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 ACOT2P49753 483 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 AFF1P51825 1210 aaKnown RBP22.58■■□□□ 1.21
CD44-222ENST00000526025 RNASELQ05823 741 aaKnown RBP22.58■■□□□ 1.21
CD44-222ENST00000526025 LRRC63Q05C16 580 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 PPP2R3AQ06190 1150 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 SKOR2Q2VWA4 1001 aaPredicted RBP22.58■■□□□ 1.21
CD44-222ENST00000526025 BRSK2Q8IWQ3 736 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 PPP1R10Q96QC0 940 aaKnown RBP22.58■■□□□ 1.21
CD44-222ENST00000526025 MIOSQ9NXC5 875 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 DERAQ9Y315 318 aa22.58■■□□□ 1.21
CD44-222ENST00000526025 SMIM28A0A1B0GU29 152 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 BIN1O00499 593 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 IL18RAPO95256 599 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 POMCP01189 267 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 NR3C1P04150 777 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 RPL13P26373 211 aaKnown RBP22.57■■□□□ 1.2
CD44-222ENST00000526025 BMPR1AP36894 532 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 NAB2Q15742 525 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 SEZ6Q53EL9 994 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 NT5DC4Q86YG4 428 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 MLKLQ8NB16 471 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 SAAL1Q96ER3 474 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 LRCH3Q96II8 777 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 FAM193BQ96PV7 902 aaPredicted RBP22.57■■□□□ 1.2
CD44-222ENST00000526025 FAM213AQ9BRX8 229 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 SEMA6BQ9H3T3 888 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 PCIF1Q9H4Z3 704 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 ZNF576Q9H609 170 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 NRDE2Q9H7Z3 1164 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 SLC38A7Q9NVC3 462 aa22.57■■□□□ 1.2
CD44-222ENST00000526025 ZNF233A6NK53 670 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 PPP1R3GB7ZBB8 358 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 CLIC2O15247 247 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 MAPK13O15264 365 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 CCNE1P24864 410 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 PPM1AP35813 382 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 P2RX5Q93086 422 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 TSG101Q99816 390 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 PLAGL2Q9UPG8 496 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 C2CD2Q9Y426 696 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 PCDHB12Q9Y5F1 795 aa22.56■■□□□ 1.2
CD44-222ENST00000526025 CD44P16070 742 aaKnown RBP22.55■■□□□ 1.2
CD44-222ENST00000526025 FXR1P51114 621 aaKnown RBP eCLIP22.55■■□□□ 1.2
CD44-222ENST00000526025 CYP2J2P51589 502 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 TUSC3Q13454 348 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 SURF1Q15526 300 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 SNRNP35Q16560 246 aaKnown RBP22.55■■□□□ 1.2
CD44-222ENST00000526025 EPC2Q52LR7 807 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 CT47A1Q5JQC4 288 aaPredicted RBP22.55■■□□□ 1.2
CD44-222ENST00000526025 ZNF697Q5TEC3 545 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 ISM2Q6H9L7 571 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 ZNF280BQ86YH2 543 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 ZC3H3Q8IXZ2 948 aaKnown RBP22.55■■□□□ 1.2
CD44-222ENST00000526025 COLGALT2Q8IYK4 626 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 COLGALT1Q8NBJ5 622 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 UROC1Q96N76 676 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 ZNF558Q96NG5 402 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 RBAKQ9NYW8 714 aaPredicted RBP22.55■■□□□ 1.2
CD44-222ENST00000526025 TMEM63CQ9P1W3 806 aa22.55■■□□□ 1.2
CD44-222ENST00000526025 BICDL2A1A5D9 508 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 LACTBL1A8MY62 500 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 XPOTO43592 962 aaKnown RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 EXOC3O60645 756 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 DDHD2O94830 711 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 CYP3A5P20815 502 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 NR2F2P24468 414 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 ALDH7A1P49419 539 aaKnown RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 NLRP12P59046 1061 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 ENPEPQ07075 957 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 ZBTB6Q15916 424 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 SPOUT1Q5T280 376 aaKnown RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 KCNT2Q6UVM3 1135 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 ZSWIM2Q8NEG5 633 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 ZMAT2Q96NC0 199 aaKnown RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 C17orf80Q9BSJ5 609 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 C11orf84Q9BUA3 381 aaPredicted RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 CXCL16Q9H2A7 254 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 TTYH1Q9H313 450 aaPredicted RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 DACH1Q9UI36 760 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 COL4A4P53420 1690 aaPredicted RBP22.54■■□□□ 1.2
CD44-222ENST00000526025 PLXNA4Q9HCM2 1894 aa22.54■■□□□ 1.2
CD44-222ENST00000526025 GOLGA8IPA6NC78 632 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 GOLGA8JA6NMD2 632 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms