RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 RBM12BQ8IXT5 1001 aaKnown RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 SPICE1Q8N0Z3 855 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 CCAR2Q8N163 923 aaKnown RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 GBP7Q8N8V2 638 aaPredicted RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 PRPF38AQ8NAV1 312 aaKnown RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 CCHCR1Q8TD31 782 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 PANK1Q8TE04 598 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 ZNF384Q8TF68 577 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 ARHGAP45Q92619 1136 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 GOLGA1Q92805 767 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 CHMP4CQ96CF2 233 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 SAMD11Q96NU1 681 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 FUCA2Q9BTY2 467 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 KRTAP4-8Q9BYQ9 185 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 IQCGQ9H095 443 aaKnown RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 TMX1Q9H3N1 280 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 ACTR5Q9H9F9 607 aaPredicted RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 TRMT13Q9NUP7 481 aaKnown RBP5.54□□□□□ -1.52
CD44-218ENST00000525469 HMG20BQ9P0W2 317 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 ODF2LQ9ULJ1 636 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 INSL6Q9Y581 213 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 PKD1L2Q7Z442 2459 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 RALGAPA2Q2PPJ7 1873 aa5.54□□□□□ -1.52
CD44-218ENST00000525469 EPG5Q9HCE0 2579 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 ABLIM1O14639 778 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 WDR46O15213 610 aaKnown RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 ADCY6O43306 1168 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 EFCAB14O75071 495 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 FSBPO95073 299 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 GJB5O95377 273 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 SKILP12757 684 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 PTGS1P23219 599 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 VAMP1P23763 118 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 HNRNPH1P31943 449 aaKnown RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 ABCD1P33897 745 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 MCAMP43121 646 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 RFX5P48382 616 aaPredicted RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 ETF1P62495 437 aaKnown RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 NKX3-2P78367 333 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 SMAD4Q13485 552 aaKnown RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 GPM6BQ13491 265 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 SART3Q15020 963 aaKnown RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 CCDC96Q2M329 555 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 SLC5A9Q2M3M2 681 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 WLSQ5T9L3 541 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 CDPF1Q6NVV7 123 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 CC2D1AQ6P1N0 951 aaPredicted RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 NXPE4Q6UWF7 544 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 PI16Q6UXB8 463 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 RINLQ6ZS11 566 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 ARMCX2Q7L311 632 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 FRMD5Q7Z6J6 570 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 TMCO2Q7Z6W1 182 aaPredicted RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 ZAR1Q86SH2 424 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 MFN1Q8IWA4 741 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 ANKRD35Q8N283 1001 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 MAGEB6Q8N7X4 407 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 MAB21L3Q8N8X9 362 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 C3orf20Q8ND61 904 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.53□□□□□ -1.52
CD44-218ENST00000525469 RUBCNQ92622 972 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 KCNB2Q92953 911 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 RMDN1Q96DB5 314 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 VWCEQ96DN2 955 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 CHAMP1Q96JM3 812 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 BAG1Q99933 345 aaPredicted RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 SCAND2PQ9GZW5 306 aaPredicted RBP5.53□□□□□ -1.52
CD44-218ENST00000525469 NUP62CLQ9H1M0 184 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 SWAP70Q9UH65 585 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 CD207Q9UJ71 328 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 MCM8Q9UJA3 840 aa5.53□□□□□ -1.52
CD44-218ENST00000525469 ATG2AQ2TAZ0 1938 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 GRIN2DO15399 1336 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 GOLGA6L10A0A0M3HER8 536 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ABHD14A-ACY1A0A1B0GW23 586 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 A0A1W2PRG0 241 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ASB14A6NK59 587 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 VWA5AO00534 786 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 MAP2K7O14733 419 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 AHCYL1O43865 530 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 PARNO95453 639 aaKnown RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 CTSBP07858 339 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 NFICP08651 508 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 UQCRFS1P1P0C7P4 283 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 FOSL1P15407 271 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 NME2P22392 152 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 NDUFV1P49821 464 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 RPS6KA3P51812 740 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 GYS2P54840 703 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 DEFB103AP81534 67 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 EXOSC9Q06265 439 aaKnown RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 DYNC1I2Q13409 638 aaKnown RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 COL19A1Q14993 1142 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ACAP1Q15027 740 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 LRRC14Q15048 493 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 KIAA0753Q2KHM9 967 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 EPC2Q52LR7 807 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 BRDTQ58F21 947 aaPredicted RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 SNRNP48Q6IEG0 339 aaKnown RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 CNKSR3Q6P9H4 555 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms