RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 LRRD1A4D1F6 860 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ACSL3O95573 720 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 PRKCBP05771 671 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 YARSP54577 528 aaKnown RBP10.86□□□□□ -0.67
MCF2-209ENST00000520602 GTF2BQ00403 316 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ZNF699Q32M78 642 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 CATSPERGQ6ZRH7 1159 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ANKRD42Q8N9B4 389 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 GPRC5DQ9NZD1 345 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 DIS3Q9Y2L1 958 aaKnown RBP10.86□□□□□ -0.67
MCF2-209ENST00000520602 WEE2P0C1S8 567 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 IFNAR2P48551 515 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 YWHAEP62258 255 aaKnown RBP10.86□□□□□ -0.67
MCF2-209ENST00000520602 MMS22LQ6ZRQ5 1243 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ENOSF1Q7L5Y1 443 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 NT5DC3Q86UY8 548 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ERICH1Q86X53 443 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 CRYGNQ8WXF5 182 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ARL8AQ96BM9 186 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 WNT8AQ9H1J5 351 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 ZNF541Q9H0D2 1346 aa10.86□□□□□ -0.67
MCF2-209ENST00000520602 LCA5LO95447 670 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 KRT1P04264 644 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 POLR2BP30876 1174 aaKnown RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 ZNF131P52739 623 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 SNRPFP62306 86 aaKnown RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 NOP14P78316 857 aaKnown RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 TRADDQ15628 312 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 UAP1Q16222 522 aaPredicted RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 DUOXA2Q1HG44 320 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 ASTE1Q2TB18 679 aaPredicted RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 Q3C1V9 767 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 CYP4F22Q6NT55 531 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 NOP9Q86U38 636 aaKnown RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 PALB2Q86YC2 1186 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 SAMD3Q8N6K7 520 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 KLRG1Q96E93 195 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 SPATC1LQ9H0A9 340 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 SPON1Q9HCB6 807 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 PCDHB2Q9Y5E7 798 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 PHF20L1A8MW92 1017 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 PI4K2BG5E9Z4 385 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 MAPTP10636 758 aaKnown RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 CDR2Q01850 454 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 TTLL4Q14679 1199 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 ZNF667Q5HYK9 610 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 AADACL2Q6P093 401 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 RBBP8NLQ8NC74 664 aaPredicted RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 HVCN1Q96D96 273 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 SPDYE16A6NNV3 312 aaPredicted RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 A6NNZ2 444 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 P4HA1P13674 534 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 GPC3P51654 580 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 NLRP11P59045 1033 aaKnown RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 WDR72Q3MJ13 1102 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 TUBB8Q3ZCM7 444 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 MAP4K3Q8IVH8 894 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 FBXO16Q8IX29 292 aaPredicted RBP10.85□□□□□ -0.67
MCF2-209ENST00000520602 NLGN2Q8NFZ4 835 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 IKBKGQ9Y6K9 419 aa10.85□□□□□ -0.67
MCF2-209ENST00000520602 RBAK-RBAKDNI3L0D1 243 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 IRF6O14896 467 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 ZNF862O60290 1169 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 GUCY1A3Q02108 690 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 MAPK7Q13164 816 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 CCDC121Q6ZUS5 278 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 B4GALNT4Q76KP1 1039 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 SLC9A9Q8IVB4 645 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 ANKRD13AQ8IZ07 590 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 TSEN2Q8NCE0 465 aaKnown RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 TMEM35BQ8NCS4 154 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 GRK7Q8WTQ7 553 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 TRAPPC12Q8WVT3 735 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 BSNDQ8WZ55 320 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 CABS1Q96KC9 395 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 CALR3Q96L12 384 aaKnown RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 CARD9Q9H257 536 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 ZWILCHQ9H900 591 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 VPS37BQ9H9H4 285 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 ANAPC5Q9UJX4 755 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 COL5A3P25940 1745 aaPredicted RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 PODXLO00592 558 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 DHX15O43143 795 aaKnown RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 CHRNA3P32297 505 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 CLCN3P51790 818 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 C7orf31Q8N865 590 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 CCDC89Q8N998 374 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 ACTRT1Q8TDG2 376 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 IPO4Q8TEX9 1081 aaKnown RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 C18orf8Q96DM3 657 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 CYFIP2Q96F07 1278 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 HEXIM2Q96MH2 286 aaKnown RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 ISCUQ9H1K1 167 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 TBK1Q9UHD2 729 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 RNF8O76064 485 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 KCNA3P22001 575 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 GARTP22102 1010 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 RRM1P23921 792 aa10.84□□□□□ -0.67
MCF2-209ENST00000520602 TBXAS1P24557 533 aaPredicted RBP10.84□□□□□ -0.67
MCF2-209ENST00000520602 EFNA5P52803 228 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms