RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DEFB129Q9H1M3 183 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 EHD4Q9H223 541 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 ETNK1Q9HBU6 452 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 TOPORSQ9NS56 1045 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 PFASO15067 1338 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 MEFVO15553 781 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 HLA-DRAP01903 254 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 NCF2P19878 526 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 IREB2P48200 963 aaKnown RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 ARPP19P56211 112 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 DHX34Q14147 1143 aaKnown RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 C18orf8Q96DM3 657 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 TLR10Q9BXR5 811 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 VCX3BQ9H321 246 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 SPC25Q9HBM1 224 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 CCDC195A0A1B0GUA6 201 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 LRRC10BA6NIK2 292 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 EML1O00423 815 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 OSBPP22059 807 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 CASP5P51878 434 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 NBPF9Q3BBW0 867 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 ANGEL2Q5VTE6 544 aaKnown RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 PHLDB3Q6NSJ2 640 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 PDZD4Q76G19 769 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 SIX6OS1Q8N1H7 587 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 FBXO25Q8TCJ0 367 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 SNF8Q96H20 258 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 EPN3Q9H201 632 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 IFT122Q9HBG6 1241 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 PPARGC1AQ9UBK2 798 aaKnown RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 TISP43B9A030 160 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 TMEM253P0C7T8 217 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 TMEM62Q0P6H9 643 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 BYSLQ13895 437 aaKnown RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 P3H1Q32P28 736 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 LRRC23Q53EV4 343 aaPredicted RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 RBBP8NLQ8NC74 664 aaPredicted RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 ATL2Q8NHH9 583 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 MCEEQ96PE7 176 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 TULP2O00295 520 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 OPHN1O60890 802 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 CALB1P05937 261 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 KRT3P12035 628 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 ORC1Q13415 861 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 KIF22Q14807 665 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 XKR3Q5GH77 459 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 FIGNQ5HY92 759 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 ZDHHC15Q96MV8 337 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 RIT2Q99578 217 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 MRPL4Q9BYD3 311 aaKnown RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 SLC5A4Q9NY91 659 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 WDR46O15213 610 aaKnown RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 CREB3O43889 395 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 FAM153BP0C7A2 387 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 SREBF1P36956 1147 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 BCAR1P56945 870 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 FAM153CQ494X1 144 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 SH2D4BQ5SQS7 431 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 CCHCR1Q8TD31 782 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 POLR3CQ9BUI4 534 aaPredicted RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 DDX23Q9BUQ8 820 aaKnown RBP12.41□□□□□ -0.42
SYNPO-204ENST00000519664 ACP6Q9NPH0 428 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 FAM153AQ9UHL3 310 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 TACC3Q9Y6A5 838 aa12.41□□□□□ -0.42
SYNPO-204ENST00000519664 COPEO14579 308 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 MAPK13O15264 365 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 WDR59Q6PJI9 974 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 LRRC31Q6UY01 552 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 ATXN7L3BQ96GX2 97 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 OSBPL8Q9BZF1 889 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 ISCUQ9H1K1 167 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 DHX35Q9H5Z1 703 aaKnown RBP12.4□□□□□ -0.42
SYNPO-204ENST00000519664 IRAK4Q9NWZ3 460 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 FAM237AA0A1B0GTK4 181 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 CFLARO15519 480 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 KLRC4O43908 158 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 GPC4O75487 556 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 TBXAS1P24557 533 aaPredicted RBP12.4□□□□□ -0.42
SYNPO-204ENST00000519664 ADORA2BP29275 332 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 ASPHQ12797 758 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 SURF1Q15526 300 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 DBN1Q16643 649 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 SHROOM1Q2M3G4 852 aaPredicted RBP12.4□□□□□ -0.42
SYNPO-204ENST00000519664 IP6K2Q9UHH9 426 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 PHF2O75151 1096 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 TXNP10599 105 aaKnown RBP12.4□□□□□ -0.42
SYNPO-204ENST00000519664 DPEP1P16444 411 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 SDC4P31431 198 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 FUT2Q10981 343 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 RWDD4Q6NW29 188 aaKnown RBP12.4□□□□□ -0.42
SYNPO-204ENST00000519664 FOXR1Q6PIV2 292 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 C4orf50Q6ZRC1 276 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 ZNF720Q7Z2F6 126 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 ZNF280CQ8ND82 737 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 TAS1R2Q8TE23 839 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 DEPDC1BQ8WUY9 529 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 PARVAQ9NVD7 372 aa12.4□□□□□ -0.42
SYNPO-204ENST00000519664 CCDC78A2IDD5 438 aa12.4□□□□□ -0.43
SYNPO-204ENST00000519664 CSDE1O75534 798 aaKnown RBP12.4□□□□□ -0.43
SYNPO-204ENST00000519664 RALAP11233 206 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms