RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	HEATR6	Q6AI08	1181 aa	Known RBP	11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	POTEH	Q6S545	545 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	CEP68	Q76N32	757 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	FERMT3	Q86UX7	667 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	CDR2L	Q86X02	465 aa	Predicted RBP	11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	FAM160A2	Q8N612	972 aa	Predicted RBP	11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	CCDC148	Q8NFR7	591 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	TBCK	Q8TEA7	893 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	FAM3C	Q92520	227 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	PARP2	Q9UGN5	583 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	PIAS3	Q9Y6X2	628 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	COL4A2	P08572	1712 aa		11.68	□□□□□ -0.54
CLDND1-231	ENST00000515620	FASN	P49327	2511 aa	Known RBP	11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	IGF2R	P11717	2491 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	C1QTNF9B	B2RNN3	333 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	EML1	O00423	815 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	B4GALT5	O43286	388 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	NPTXR	O95502	500 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	C1QTNF9	P0C862	333 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	OR1D2	P34982	312 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	QARS	P47897	775 aa	Known RBP	11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	LIMK1	P53667	647 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	RCAN1	P53805	252 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	RAB33A	Q14088	237 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	CCDC6	Q16204	474 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	UNQ6494/PRO21346	Q6UXR6	183 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	EXOC8	Q8IYI6	725 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	C12orf50	Q8NA57	414 aa	Predicted RBP	11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	ETNPPL	Q8TBG4	499 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	TCP11	Q8WWU5	503 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	TRMT61B	Q9BVS5	477 aa	Known RBP	11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	ANO2	Q9NQ90	1003 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	RXFP3	Q9NSD7	469 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	VPS54	Q9P1Q0	977 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	WRAP73	Q9P2S5	460 aa	Predicted RBP	11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	ZMIZ1	Q9ULJ6	1067 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	PKD1L2	Q7Z442	2459 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	NOTCH4	Q99466	2003 aa		11.67	□□□□□ -0.54
CLDND1-231	ENST00000515620	F5	P12259	2224 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	CCDC196	A0A1B0GTZ2	297 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	NRG2	O14511	850 aa	Predicted RBP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	TM4SF5	O14894	197 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	ASAP2	O43150	1006 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	ARF4	P18085	180 aa	Predicted RBP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	GDI1	P31150	447 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	CNR2	P34972	360 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	PTEN	P60484	403 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	EXOSC10	Q01780	885 aa	Known RBP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	AKAP17A	Q02040	695 aa	Known RBP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	MBTD1	Q05BQ5	628 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	TUSC3	Q13454	348 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	GAS6	Q14393	721 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	PCBP1	Q15365	356 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	AMHR2	Q16671	573 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	UVSSA	Q2YD98	709 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	FAM78A	Q5JUQ0	283 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	PDXDC1	Q6P996	788 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	DHX32	Q7L7V1	743 aa	Known RBP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	LONP2	Q86WA8	852 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	IRF7	Q92985	503 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	ESYT1	Q9BSJ8	1104 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	ZFP14	Q9HCL3	533 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	ZNF334	Q9HCZ1	680 aa	Predicted RBP	11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	PPME1	Q9Y570	386 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	CDY1	Q9Y6F8	540 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	ZMYM2	Q9UBW7	1377 aa		11.66	□□□□□ -0.54
CLDND1-231	ENST00000515620	TICRR	Q7Z2Z1	1910 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	CYP3A7-CYP3A51P	A0A087WV96	503 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620		K7ESF4	209 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	PRPF3	O43395	683 aa	Known RBP	11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	DKC1	O60832	514 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	CHRNB1	P11230	501 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	CYP3A7	P24462	503 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	YWHAB	P31946	246 aa	Known RBP	11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	FGD1	P98174	961 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	ELAVL2	Q12926	359 aa	Known RBP	11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	TFDP1	Q14186	410 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	STPG1	Q5TH74	334 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	RNF20	Q5VTR2	975 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	SLC27A1	Q6PCB7	646 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	VIT	Q6UXI7	678 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620		Q6ZS52	159 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	SPEM1	Q8N4L4	309 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	TCEAL4	Q96EI5	215 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	MTR	Q99707	1265 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	LXN	Q9BS40	222 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	SLK	Q9H2G2	1235 aa	Predicted RBP	11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	ARRDC1-AS1	Q9H2J1	176 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	RBM12	Q9NTZ6	932 aa	Known RBP	11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	SPEG	Q15772	3267 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	RALGAPA1	Q6GYQ0	2036 aa		11.65	□□□□□ -0.54
CLDND1-231	ENST00000515620	PTGES	O14684	152 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	AXIN1	O15169	862 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	SLC37A4	O43826	429 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	KCNK5	O95279	499 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	LRG1	P02750	347 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	P4HB	P07237	508 aa	Known RBP	11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	PSMC3	P17980	439 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	CCNE1	P24864	410 aa		11.64	□□□□□ -0.55
CLDND1-231	ENST00000515620	HOXC13	P31276	330 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms