RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SEC16BQ96JE7 1060 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 BRIP1Q9BX63 1249 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 HEMGNQ9BXL5 484 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 TRIM45Q9H8W5 580 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 PIK3C2BO00750 1634 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 CCT8L1PA6NM43 557 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 PDE8BO95263 885 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 CLPTM1O96005 669 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 LTKP29376 864 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 ROR2Q01974 943 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 INPP5AQ14642 412 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 CAPSLQ8WWF8 208 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 CYFIP2Q96F07 1278 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 NARS2Q96I59 477 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 MTFR1LQ9H019 292 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 GREM2Q9H772 168 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM25AB3EWG3 89 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM25CB3EWG5 89 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM25GB3EWG6 89 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 SH2B2O14492 632 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 MTRF1O75570 445 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 MYL1P05976 194 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 VEGFAP15692 232 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 DSG1Q02413 1049 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF211Q13398 564 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 KCNB1Q14721 858 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 TAS2R42Q7RTR8 314 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 YAF2Q8IY57 180 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FMR1NBQ8N0W7 255 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 PARK7Q99497 189 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 MMADHCQ9H3L0 296 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 KCNF1Q9H3M0 494 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 MRPL47Q9HD33 250 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM50BQ9Y247 325 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 ATP8B3O60423 1300 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 POTEFA5A3E0 1075 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 LRRC53A6NM62 1247 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 LGALS16A8MUM7 142 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 ASAP2O43150 1006 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 CDC27P30260 824 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 MXI1P50539 228 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 POTEAQ6S8J7 498 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM81BQ96LP2 452 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 ARHGEF3Q9NR81 526 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 FNDC3AQ9Y2H6 1198 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 PI4K2BG5E9Z4 385 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 C21orf2O43822 256 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 RAD17O75943 681 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 OATP04181 439 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 ATP1A1P05023 1023 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 POLGP54098 1239 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 PMS2P54278 862 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TUBA1BP68363 451 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 RESP18Q5W5W9 173 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 SLFN13Q68D06 897 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TUBA1AQ71U36 451 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 ZCCHC7Q8N3Z6 543 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 KCTD6Q8NC69 237 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 RNF217Q8TC41 542 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 COA1Q9GZY4 146 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TTC7AQ9ULT0 858 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 AURKCQ9UQB9 309 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TTC26A0AVF1 554 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 KPNA7A9QM74 516 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TRIM24O15164 1050 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 STX7O15400 261 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TBC1D4O60343 1298 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 KRT38O76015 456 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 ATN1P54259 1190 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TBCCQ15814 346 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM45BPQ6NSW5 357 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TTC33Q6PID6 262 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 PRR23AA6NEV1 266 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 IGF2BP3O00425 579 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM107AO95990 144 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 PTPREP23469 700 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 LSP1P33241 339 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 MAPRE2Q15555 327 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 ABCB5Q2M3G0 1257 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 WLSQ5T9L3 541 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 LRRC8EQ6NSJ5 796 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 CLEC4GQ6UXB4 293 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TRIM69Q86WT6 500 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 GALNT4Q8N4A0 578 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 MARCH10Q8NA82 808 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 CEP44Q9C0F1 390 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 SCN3BQ9NY72 215 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 WDR64B1ANS9 1081 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 S100A6P06703 90 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF18P17022 549 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 SLC16A2P36021 539 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 MTTPP55157 894 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 DYNLL1P63167 89 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TUBA4AP68366 448 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 ICA1Q05084 483 aa9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 BYSLQ13895 437 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 TOB2Q14106 344 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 CAPRIN1Q14444 709 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-218ENST00000513024 E4F1Q66K89 784 aaPredicted RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 802.9 ms