RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CNNM4Q6P4Q7 775 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 DRC7Q8IY82 874 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 AHI1Q8N157 1196 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 NEU1Q99519 415 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 KLHL11Q9NVR0 708 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 NOC2LQ9Y3T9 749 aaKnown RBP4.19□□□□□ -1.74
NUP54-208ENST00000508604 A0A1B0GTW7 788 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 TMEM127O75204 238 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 POU3F2P20265 443 aaPredicted RBP4.18□□□□□ -1.74
NUP54-208ENST00000508604 CANXP27824 592 aaKnown RBP4.18□□□□□ -1.74
NUP54-208ENST00000508604 SRSF4Q08170 494 aaKnown RBP4.18□□□□□ -1.74
NUP54-208ENST00000508604 BMS1Q14692 1282 aaKnown RBP4.18□□□□□ -1.74
NUP54-208ENST00000508604 THNSL2Q86YJ6 484 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 SMC1BQ8NDV3 1235 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 OR2W6PQ8NHA6 318 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 SCARB1Q8WTV0 552 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 TMEM74BQ9NUR3 256 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 TMPRSS11EQ9UL52 423 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 MTO1Q9Y2Z2 717 aaKnown RBP4.18□□□□□ -1.74
NUP54-208ENST00000508604 SALL3Q9BXA9 1300 aa4.18□□□□□ -1.74
NUP54-208ENST00000508604 DNAJC9-AS1A6NH13 148 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 CXorf49A8MYA2 514 aaPredicted RBP4.17□□□□□ -1.74
NUP54-208ENST00000508604 GPANK1O95872 356 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 LSSP48449 732 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 LGALS4P56470 323 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 CXADRP78310 365 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 SCAPQ12770 1279 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 TRIM25Q14258 630 aaKnown RBP4.17□□□□□ -1.74
NUP54-208ENST00000508604 B3GNTL1Q67FW5 361 aaPredicted RBP4.17□□□□□ -1.74
NUP54-208ENST00000508604 LRRTM3Q86VH5 581 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 COLGALT2Q8IYK4 626 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 PPM1KQ8N3J5 372 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 SLC35B2Q8TB61 432 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 PTCD3Q96EY7 689 aaKnown RBP4.17□□□□□ -1.74
NUP54-208ENST00000508604 AIFM2Q9BRQ8 373 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 ALG13Q9NP73 1137 aaKnown RBP4.17□□□□□ -1.74
NUP54-208ENST00000508604 SPTLC3Q9NUV7 552 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 TMEM260Q9NX78 707 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 MOCS1Q9NZB8 636 aa4.17□□□□□ -1.74
NUP54-208ENST00000508604 LCHNA4D1U4 455 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 ERN1O75460 977 aaKnown RBP4.16□□□□□ -1.74
NUP54-208ENST00000508604 POMCP01189 267 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 ELANEP08246 267 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 OCA2Q04671 838 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 KIAA1614Q5VZ46 1190 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 GRASPQ7Z6J2 395 aaPredicted RBP4.16□□□□□ -1.74
NUP54-208ENST00000508604 FUBP1Q96AE4 644 aaKnown RBP4.16□□□□□ -1.74
NUP54-208ENST00000508604 UHRF1Q96T88 793 aaPredicted RBP4.16□□□□□ -1.74
NUP54-208ENST00000508604 ZSWIM1Q9BR11 485 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 KLK15Q9H2R5 256 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 KCTD10Q9H3F6 313 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 FOXJ2Q9P0K8 574 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 KCNE5Q9UJ90 142 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 LRRC3CA6NJW4 275 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 IKBKBO14920 756 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 AKR1B10O60218 316 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 LPLP06858 475 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 ZNF81P51508 661 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 PER3P56645 1201 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 SP140Q13342 867 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 PTF1AQ7RTS3 328 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 ZNF572Q7Z3I7 529 aaPredicted RBP4.16□□□□□ -1.74
NUP54-208ENST00000508604 SLC41A1Q8IVJ1 513 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 ANKS1AQ92625 1134 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 PDLIM2Q96JY6 352 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 FEZ1Q99689 392 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 MS4A5Q9H3V2 200 aa4.16□□□□□ -1.74
NUP54-208ENST00000508604 SETD1BQ9UPS6 1966 aaKnown RBP4.15□□□□□ -1.74
NUP54-208ENST00000508604 PEX1O43933 1283 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 FKBP9O95302 570 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 RAP2AP10114 183 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 IL2RBP14784 551 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 ATP5JP18859 108 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 FGFR4P22455 802 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 UGT8Q16880 541 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 MST1LQ2TV78 715 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 PITRM1Q5JRX3 1037 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 BROXQ5VW32 411 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 FKBP9P1Q75LS8 142 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 RASSF3Q86WH2 238 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 LYSMD2Q8IV50 215 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 OR7D4Q8NG98 312 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 DNAJC2Q99543 621 aaKnown RBP4.15□□□□□ -1.75
NUP54-208ENST00000508604 BCO1Q9HAY6 547 aa4.15□□□□□ -1.75
NUP54-208ENST00000508604 MGST3O14880 152 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 ADCY6O43306 1168 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 ECHS1P30084 290 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 ADSLP30566 484 aaPredicted RBP4.14□□□□□ -1.75
NUP54-208ENST00000508604 HSD11B2P80365 405 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 CT83Q5H943 113 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 HOMER1Q86YM7 354 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 TRMT2AQ8IZ69 625 aaKnown RBP4.14□□□□□ -1.75
NUP54-208ENST00000508604 REPS2Q8NFH8 660 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 SLC5A5Q92911 643 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 NINJ1Q92982 152 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 RAX2Q96IS3 184 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 UROC1Q96N76 676 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 MRI1Q9BV20 369 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 ASB6Q9NWX5 421 aa4.14□□□□□ -1.75
NUP54-208ENST00000508604 KCTD5Q9NXV2 234 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms