RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 OR52Z1P0C646 297 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 FDPSP14324 419 aaKnown RBP23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 RPL17P18621 184 aaKnown RBP23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 CYP11B2P19099 503 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 NEK4P51957 841 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 PRKCQQ04759 706 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 RTP2Q5QGT7 225 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 ANKS3Q6ZW76 656 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 GRASPQ7Z6J2 395 aaPredicted RBP23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 HASPINQ8TF76 798 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 PDZD7Q9H5P4 517 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 GPRC5CQ9NQ84 441 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 SLC38A7Q9NVC3 462 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 SNTG2Q9NY99 539 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 KCNH3Q9ULD8 1083 aa23.17■■□□□ 1.3
SQSTM1-210ENST00000506042 KRBA1A5PL33 1030 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 F8W810 466 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 NCAM2O15394 837 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 KIF4AO95239 1232 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 ELF1P32519 619 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 ME3Q16798 604 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 SPECC1Q5M775 1068 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 RSPO2Q6UXX9 243 aaPredicted RBP23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 C8orf76Q96K31 380 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 CCDC94Q9BW85 323 aaPredicted RBP23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 KCNG1Q9UIX4 513 aa23.16■■□□□ 1.3
SQSTM1-210ENST00000506042 TMEM189-UBE2V1I3L0A0 370 aa23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 B3GAT3O94766 335 aa23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 C1orf210Q8IVY1 113 aa23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 LNX1Q8TBB1 728 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 DDX27Q96GQ7 796 aaKnown RBP23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 GDAQ9Y2T3 454 aa23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 ZFHX2Q9C0A1 2572 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-210ENST00000506042 K7ERI5 159 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 SPATA31C1P0DKV0 1188 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 TRAPPC10P48553 1259 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 FOSBP53539 338 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 RAB33AQ14088 237 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 PABPC1LQ4VXU2 614 aaKnown RBP23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 AXDND1Q5T1B0 1012 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 NOSTRINQ8IVI9 506 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 PJA1Q8NG27 643 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 SLC7A14Q8TBB6 771 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 RABGGTAQ92696 567 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 SECISBP2LQ93073 1101 aaKnown RBP23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 NELL2Q99435 816 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 CLSTN3Q9BQT9 956 aa23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 FOXP1Q9H334 677 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 MRPS17Q9Y2R5 130 aaKnown RBP23.14■■□□□ 1.29
SQSTM1-210ENST00000506042 LRG1P02750 347 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 OR1D2P34982 312 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 CCT6AP40227 531 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 STARD6P59095 220 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 HMGN5P82970 282 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 ATF7IP2Q5U623 682 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 POTEGQ6S5H5 508 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 FAM184AQ8NB25 1140 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 FGF13Q92913 245 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 LLPHQ9BRT6 129 aaKnown RBP23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 OSBPL6Q9BZF3 934 aa23.13■■□□□ 1.29
SQSTM1-210ENST00000506042 KANSL1LA0AUZ9 987 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 PTGESO14684 152 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 CCL16O15467 120 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 KINO60870 393 aaKnown RBP23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 MED24O75448 989 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 ELMOD1Q8N336 334 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 FEZF2Q8TBJ5 459 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 GDE1Q9NZC3 331 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 MTRRQ9UBK8 725 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 MRPS23Q9Y3D9 190 aaKnown RBP23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 BACE2Q9Y5Z0 518 aa23.12■■□□□ 1.29
SQSTM1-210ENST00000506042 H7C4K7 107 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 PRRG1O14668 218 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 LAMTOR5O43504 91 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 DCNP07585 359 aaKnown RBP23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 DMP1Q13316 513 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 MLF2Q15773 248 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 DRC1Q96MC2 740 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 PAAF1Q9BRP4 392 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 LRWD1Q9UFC0 647 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 KIF3AQ9Y496 699 aa23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 RBM19Q9Y4C8 960 aaKnown RBP23.11■■□□□ 1.29
SQSTM1-210ENST00000506042 FGFR3P22607 806 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 PPP2R5DQ14738 602 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 TTC38Q5R3I4 469 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 RUBCNQ92622 972 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 TCHPQ9BT92 498 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 MRPL4Q9BYD3 311 aaKnown RBP23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 CCDC113Q9H0I3 377 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 TMEM60Q9H2L4 133 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 SPATA6Q9NWH7 488 aaPredicted RBP23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 FBXO4Q9UKT5 387 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 LIMCH1Q9UPQ0 1083 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 TNFSF13BQ9Y275 285 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 NUB1Q9Y5A7 615 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 CDY1Q9Y6F8 540 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 DOCK8Q8NF50 2099 aa23.1■■□□□ 1.29
SQSTM1-210ENST00000506042 A0A087WWV3 80 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 CCDC169A6NNP5 214 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 230.1 ms