RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 FAM83AQ86UY5 434 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SLC13A5Q86YT5 568 aaPredicted RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PPM1KQ8N3J5 372 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ZNF564Q8TBZ8 553 aaPredicted RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 NUP85Q9BW27 656 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 COQ4Q9Y3A0 265 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PHF20L1A8MW92 1017 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 COILP38432 576 aaPredicted RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MTMR1Q13613 665 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SNRNP35Q16560 246 aaKnown RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SPRED3Q2MJR0 410 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 DENND2CQ68D51 928 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 APOBEC3FQ8IUX4 373 aaKnown RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 C4orf19Q8IY42 314 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SYTL5Q8TDW5 730 aaPredicted RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CDCA5Q96FF9 252 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 XPO6Q96QU8 1125 aaKnown RBP17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 OSBPL7Q9BZF2 842 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ATP9AO75110 1047 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CYP11B1P15538 503 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MMP13P45452 471 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MFAP3P55082 362 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TTLL12Q14166 644 aaPredicted RBP17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PARD3BQ8TEW8 1205 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 DDX1Q92499 740 aaKnown RBP17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SAAL1Q96ER3 474 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TAAR1Q96RJ0 339 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 POP1Q99575 1024 aaKnown RBP17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TIPINQ9BVW5 301 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 FAM129AQ9BZQ8 928 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 GTF3C4Q9UKN8 822 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SUFUQ9UMX1 484 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 IFI35P80217 286 aaPredicted RBP17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CDR2Q01850 454 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 DRP2Q13474 957 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PLA2G4FQ68DD2 849 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PNMA8AQ86V59 439 aaPredicted RBP17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TMEM161BQ8NDZ6 487 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ART4Q93070 314 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ZNF653Q96CK0 615 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 AZI2Q9H6S1 392 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TBC1D22BQ9NU19 505 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TBX20Q9UMR3 447 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 WDR81Q562E7 1941 aa17.24■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCDC169A6NNP5 214 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCNE2O96020 404 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 GBP1P32455 592 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 KCNJ1P48048 391 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 GPC3P51654 580 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MAP3K10Q02779 954 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 FAM102BQ5T8I3 360 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 FKBP1CQ5VVH2 108 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 KRT39Q6A163 491 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TRMT1LQ7Z2T5 733 aaKnown RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MCF2L2Q86YR7 1114 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCDC13Q8IYE1 715 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 C12orf50Q8NA57 414 aaPredicted RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ATXN2LQ8WWM7 1075 aaKnown RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PSPC1Q8WXF1 523 aaKnown RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ELMO3Q96BJ8 720 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCDC127Q96BQ5 260 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 WRNIP1Q96S55 665 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 IWS1Q96ST2 819 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TMEM109Q9BVC6 243 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 KIFC3Q9BVG8 833 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TOPORSQ9NS56 1045 aaPredicted RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PARP2Q9UGN5 583 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TLDC2A0PJX2 215 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SPOPO43791 374 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CHN1P15882 459 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PLCB4Q15147 1175 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TNFAIP8L3Q5GJ75 292 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 NSMFQ6X4W1 530 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MAP4K3Q8IVH8 894 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CPXCR1Q8N123 301 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ZNF317Q96PQ6 595 aaPredicted RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ZNF341Q9BYN7 854 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RAVER2Q9HCJ3 691 aaKnown RBP17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TMEM8AQ9HCN3 771 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 UVRAGQ9P2Y5 699 aa17.23■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 DNM1LO00429 736 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RIPK2O43353 540 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 EIF2AK2P19525 551 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CNGA1P29973 690 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PSMC5P62195 406 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PGM5Q15124 567 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ZNF568Q3ZCX4 644 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 XKR9Q5GH70 373 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SLC39A4Q6P5W5 647 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCDC121Q6ZUS5 278 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ARMC9Q7Z3E5 817 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CACNA2D3Q8IZS8 1091 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TAS1R2Q8TE23 839 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 DHX38Q92620 1227 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CHMP6Q96FZ7 201 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CLMNQ96JQ2 1002 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CABS1Q96KC9 395 aa17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MTRF1LQ9UGC7 380 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 H0YHG0 523 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TP73O15350 636 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms