RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TSGA10IPQ3SY00 556 aa18.32■□□□□ 0.52
VIM-208ENST00000497849 CDR2LQ86X02 465 aaPredicted RBP18.32■□□□□ 0.52
VIM-208ENST00000497849 IFNLR1Q8IU57 520 aaPredicted RBP18.32■□□□□ 0.52
VIM-208ENST00000497849 TRIM6Q9C030 488 aaPredicted RBP18.32■□□□□ 0.52
VIM-208ENST00000497849 XPNPEP1Q9NQW7 623 aa18.32■□□□□ 0.52
VIM-208ENST00000497849 MRPS23Q9Y3D9 190 aaKnown RBP18.32■□□□□ 0.52
VIM-208ENST00000497849 ZMYM2Q9UBW7 1377 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 CASTOR2A6NHX0 329 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 NRG2O14511 850 aaPredicted RBP18.31■□□□□ 0.52
VIM-208ENST00000497849 ZBTB39O15060 712 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 B4GALT5O43286 388 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 HRO43593 1189 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 P4HBP07237 508 aaKnown RBP18.31■□□□□ 0.52
VIM-208ENST00000497849 FCARP24071 287 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 PPP2R5CQ13362 524 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 TUSC3Q13454 348 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 RAB33AQ14088 237 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 SIM2Q14190 667 aaPredicted RBP18.31■□□□□ 0.52
VIM-208ENST00000497849 N4BP2L1Q5TBK1 243 aaPredicted RBP18.31■□□□□ 0.52
VIM-208ENST00000497849 HACE1Q8IYU2 909 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 ELSPBP1Q96BH3 223 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 RNF26Q9BY78 433 aaPredicted RBP18.31■□□□□ 0.52
VIM-208ENST00000497849 GDE1Q9NZC3 331 aa18.31■□□□□ 0.52
VIM-208ENST00000497849 ZZEF1O43149 2961 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 M0R2N6 131 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 MAN2B1O00754 1011 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 SLC37A4O43826 429 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 DKC1O60832 514 aaKnown RBP eCLIP18.3■□□□□ 0.52
VIM-208ENST00000497849 NPTXRO95502 500 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 CPA1P15085 419 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 KCNA4P22459 653 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 YWHABP31946 246 aaKnown RBP18.3■□□□□ 0.52
VIM-208ENST00000497849 OR1D2P34982 312 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 CCR3P51677 355 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 SHC2P98077 582 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 SATB1Q01826 763 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 AKAP17AQ02040 695 aaKnown RBP18.3■□□□□ 0.52
VIM-208ENST00000497849 DMWDQ09019 674 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 NCBP1Q09161 790 aaKnown RBP18.3■□□□□ 0.52
VIM-208ENST00000497849 SRSF5Q13243 272 aaKnown RBP18.3■□□□□ 0.52
VIM-208ENST00000497849 GRM2Q14416 872 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 PPP2R5DQ14738 602 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 MOXD1Q6UVY6 613 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 C4orf19Q8IY42 314 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 MTRQ99707 1265 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 IER2Q9BTL4 223 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 SLC26A6Q9BXS9 759 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 LMAN1LQ9HAT1 526 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 PARP2Q9UGN5 583 aa18.3■□□□□ 0.52
VIM-208ENST00000497849 ZFYVE26Q68DK2 2539 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 RHOP08100 348 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 CEBPBP17676 345 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 NLRP5P59047 1200 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 POU5F1BQ06416 359 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 CAPSQ13938 189 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 GAS6Q14393 721 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 MXD4Q14582 209 aaPredicted RBP18.29■□□□□ 0.52
VIM-208ENST00000497849 SLC27A1Q6PCB7 646 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 Q6ZUG5 572 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 ASAP3Q8TDY4 903 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 DDX1Q92499 740 aaKnown RBP18.29■□□□□ 0.52
VIM-208ENST00000497849 BRF1Q92994 677 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 LXNQ9BS40 222 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 C22orf23Q9BZE7 217 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 CXCL16Q9H2A7 254 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 AVENQ9NQS1 362 aaPredicted RBP18.29■□□□□ 0.52
VIM-208ENST00000497849 SH3GLB2Q9NR46 395 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 DDX25Q9UHL0 483 aaKnown RBP18.29■□□□□ 0.52
VIM-208ENST00000497849 PCDHA4Q9UN74 947 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 GREB1Q4ZG55 1949 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 SPEGQ15772 3267 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 SDK1Q7Z5N4 2213 aa18.29■□□□□ 0.52
VIM-208ENST00000497849 A0A1B0GUA9 196 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 CHURC1-FNTBB4DL54 471 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 PTGESO14684 152 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 TM4SF5O14894 197 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 IGFBP6P24592 240 aaPredicted RBP18.28■□□□□ 0.52
VIM-208ENST00000497849 FNTBP49356 437 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 FGD1P98174 961 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 NAB2Q15742 525 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 XKR9Q5GH70 373 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 RTL10Q7L3V2 364 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 FAM3CQ92520 227 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 BRD9Q9H8M2 597 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 KCNMB3Q9NPA1 279 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 RGL1Q9NZL6 768 aa18.28■□□□□ 0.52
VIM-208ENST00000497849 CHRNB1P11230 501 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 HOXB3P14651 431 aaPredicted RBP18.27■□□□□ 0.52
VIM-208ENST00000497849 IFNAR1P17181 557 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 CXCL12P48061 93 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 TFDP1Q14186 410 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 NPY5RQ15761 445 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 FAM78AQ5JUQ0 283 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 PRSS36Q5K4E3 855 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 PDXDC1Q6P996 788 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 OTUD6AQ7L8S5 288 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.27■□□□□ 0.52
VIM-208ENST00000497849 MAP4K3Q8IVH8 894 aa18.27■□□□□ 0.52
VIM-208ENST00000497849 SLKQ9H2G2 1235 aaPredicted RBP18.27■□□□□ 0.52
VIM-208ENST00000497849 ZNF334Q9HCZ1 680 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms