RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	ESRRB	O95718	433 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	ELANE	P08246	267 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	ADSL	P30566	484 aa	Predicted RBP	4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	CDK17	Q00537	523 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	SCAP	Q12770	1279 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	SP140	Q13342	867 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	MUM1	Q2TAK8	710 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	RRP12	Q5JTH9	1297 aa	Known RBP	4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	KCNK18	Q7Z418	384 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	STRA8	Q7Z7C7	330 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	NOP9	Q86U38	636 aa	Known RBP	4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	OR56A1	Q8NGH5	318 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	LMBR1	Q8WVP7	490 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	AUTS2	Q8WXX7	1259 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	HOXB13	Q92826	284 aa	Predicted RBP	4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	FATE1	Q969F0	183 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	CAVIN3	Q969G5	261 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	FUBP1	Q96AE4	644 aa	Known RBP	4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	KLHL11	Q9NVR0	708 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	FAM30A	Q9NZY2	134 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	MAST3	O60307	1309 aa		4.9	□□□□□ -1.63
CBX3-208	ENST00000497498	POLR2A	P24928	1970 aa	Known RBP	4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	CDKL5	O76039	1030 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	ECHS1	P30084	290 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	SREBF1	P36956	1147 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	MPL	P40238	635 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	C21orf58	P58505	322 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	MXRA7	P84157	204 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	STRN3	Q13033	797 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	TAF7L	Q5H9L4	462 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	SYCE2	Q6PIF2	218 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	MAPKAPK5	Q8IW41	473 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	CMIP	Q8IY22	773 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	TMEM132C	Q8N3T6	1108 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	R3HDML	Q9H3Y0	253 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	GREM2	Q9H772	168 aa		4.89	□□□□□ -1.63
CBX3-208	ENST00000497498	MASP2	O00187	686 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	FOS	P01100	380 aa	Predicted RBP	4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	MTHFD2	P13995	350 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	GUCY1A2	P33402	732 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	IL12RB1	P42701	662 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	MRPS21	P82921	87 aa	Known RBP	4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	PPP3CA	Q08209	521 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	ANO4	Q32M45	955 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	COLEC12	Q5KU26	742 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	TSHZ3	Q63HK5	1081 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	AFMID	Q63HM1	303 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	B3GNTL1	Q67FW5	361 aa	Predicted RBP	4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	FAM180A	Q6UWF9	173 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	MED25	Q71SY5	747 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	DRC7	Q8IY82	874 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	SIMC1	Q8NDZ2	872 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	SLC9A6	Q92581	669 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	MRI1	Q9BV20	369 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	IFT122	Q9HBG6	1241 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	RBM12	Q9NTZ6	932 aa	Known RBP	4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	RNF181	Q9P0P0	153 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	INSL6	Q9Y581	213 aa		4.88	□□□□□ -1.63
CBX3-208	ENST00000497498	COL11A2	P13942	1736 aa	Predicted RBP	4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	GOLGA8A	A7E2F4	631 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	BRINP1	O60477	761 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	IL2RB	P14784	551 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	CD38	P28907	300 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	CXCR5	P32302	372 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	CCT2	P78371	535 aa	Known RBP	4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	OCA2	Q04671	838 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	MPP3	Q13368	585 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	ERCC6L	Q2NKX8	1250 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	MUM1L1	Q5H9M0	696 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	OTUD7B	Q6GQQ9	843 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	FBXO42	Q6P3S6	717 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	GPR149	Q86SP6	731 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	UBR7	Q8N806	425 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	FAM98A	Q8NCA5	519 aa	Known RBP	4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	TGFBRAP1	Q8WUH2	860 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	BOD1	Q96IK1	185 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	PHACTR3	Q96KR7	559 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	QRSL1	Q9H0R6	528 aa	Known RBP	4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	CAAP1	Q9H8G2	361 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	VTA1	Q9NP79	307 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	TMEM74B	Q9NUR3	256 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498	MOCS1	Q9NZB8	636 aa		4.87	□□□□□ -1.63
CBX3-208	ENST00000497498		A0A1B0GTW7	788 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	ITGAM	P11215	1152 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	FDXR	P22570	491 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	GCSH	P23434	173 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	SOX5	P35711	763 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	RAP2B	P61225	183 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	SPDYE7P	Q495Y7	208 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	RD3	Q7Z3Z2	195 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	FAM43A	Q8N2R8	423 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	PQLC1	Q8N2U9	271 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	AFAP1L2	Q8N4X5	818 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	FBXO18	Q8NFZ0	1043 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	ALOXE3	Q9BYJ1	711 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	REXO4	Q9GZR2	422 aa	Known RBP	4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	RNPEP	Q9H4A4	650 aa		4.86	□□□□□ -1.63
CBX3-208	ENST00000497498	POMC	P01189	267 aa		4.85	□□□□□ -1.63
CBX3-208	ENST00000497498	ATP5J	P18859	108 aa		4.85	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms