RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 TARS2Q9BW92 718 aaKnown RBP13.99□□□□□ -0.17
PTPRF-214ENST00000496043 CXCL16Q9H2A7 254 aa13.99□□□□□ -0.17
PTPRF-214ENST00000496043 PTPRHQ9HD43 1115 aa13.99□□□□□ -0.17
PTPRF-214ENST00000496043 TOPORSQ9NS56 1045 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-214ENST00000496043 CACNG4Q9UBN1 327 aa13.99□□□□□ -0.17
PTPRF-214ENST00000496043 SORCS3Q9UPU3 1222 aa13.99□□□□□ -0.17
PTPRF-214ENST00000496043 TGM5O43548 720 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 MYBP10242 640 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 MCF2P10911 925 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 PDCP20941 246 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 SLC12A3P55017 1021 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 RAD51AP2Q09MP3 1159 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 ZNF568Q3ZCX4 644 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 TMEM119Q4V9L6 283 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 PDXDC1Q6P996 788 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 LILRA6Q6PI73 481 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 CCDC149Q6ZUS6 474 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 TAS1R3Q7RTX0 852 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 GLYCTKQ8IVS8 523 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 SUGP1Q8IWZ8 645 aaKnown RBP13.98□□□□□ -0.17
PTPRF-214ENST00000496043 HASPINQ8TF76 798 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 UROC1Q96N76 676 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 ACAP3Q96P50 834 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 PPP1R10Q96QC0 940 aaKnown RBP13.98□□□□□ -0.17
PTPRF-214ENST00000496043 RHOBTB2Q9BYZ6 727 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 CDT1Q9H211 546 aa13.98□□□□□ -0.17
PTPRF-214ENST00000496043 SMIM28A0A1B0GU29 152 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 H0YCG3 227 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 TRAPPC3O43617 180 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 B3GAT3O94766 335 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 KIF4AO95239 1232 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 RPL17P18621 184 aaKnown RBP13.97□□□□□ -0.17
PTPRF-214ENST00000496043 LONP1P36776 959 aaKnown RBP13.97□□□□□ -0.17
PTPRF-214ENST00000496043 OSTNP61366 133 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 MTMR3Q13615 1198 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 XKR4Q5GH76 650 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 RTP2Q5QGT7 225 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 PRSS55Q6UWB4 352 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-214ENST00000496043 MPZL3Q6UWV2 235 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 ALKAL1Q6UXT8 129 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 FBXL6Q8N531 539 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 LNX1Q8TBB1 728 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-214ENST00000496043 FEZF2Q8TBJ5 459 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 PIK3R5Q8WYR1 880 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 STAMQ92783 540 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 ASIC4Q96FT7 647 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 DDX27Q96GQ7 796 aaKnown RBP13.97□□□□□ -0.17
PTPRF-214ENST00000496043 PIDD1Q9HB75 910 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 SLC38A7Q9NVC3 462 aa13.97□□□□□ -0.17
PTPRF-214ENST00000496043 LARSQ9P2J5 1176 aaKnown RBP13.97□□□□□ -0.17
PTPRF-214ENST00000496043 VPS37CA5D8V6 355 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-214ENST00000496043 TMEM189-UBE2V1I3L0A0 370 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 RFPL2O75678 378 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 BRD1O95696 1058 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 PROZP22891 400 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 CLCNKBP51801 687 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 SF3A1Q15459 793 aaKnown RBP13.96□□□□□ -0.17
PTPRF-214ENST00000496043 ARSHQ5FYA8 562 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 GLRA4Q5JXX5 417 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-214ENST00000496043 CEP120Q8N960 986 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 TMEM161BQ8NDZ6 487 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 SMG7Q92540 1137 aaKnown RBP13.96□□□□□ -0.17
PTPRF-214ENST00000496043 ZBTB45Q96K62 511 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-214ENST00000496043 CLSTN3Q9BQT9 956 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 PRKD2Q9BZL6 878 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 WDR6Q9NNW5 1121 aaKnown RBP13.96□□□□□ -0.17
PTPRF-214ENST00000496043 ZDHHC7Q9NXF8 308 aa13.96□□□□□ -0.17
PTPRF-214ENST00000496043 TDRD15B5MCY1 1934 aaKnown RBP13.96□□□□□ -0.18
PTPRF-214ENST00000496043 C5orf42Q9H799 3197 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 NPHP3-ACAD11A0A0J9YXS1 232 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 CLDN3O15551 220 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 TOM1L1O75674 476 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 ZMYND10O75800 440 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 PAPLNO95428 1278 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 ASGR2P07307 311 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 MAPTP10636 758 aaKnown RBP13.95□□□□□ -0.18
PTPRF-214ENST00000496043 FGFR3P22607 806 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 DHX8Q14562 1220 aaKnown RBP13.95□□□□□ -0.18
PTPRF-214ENST00000496043 PSMD5Q16401 504 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 UPP1Q16831 310 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 ZPBP2Q6X784 338 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 RASSF8Q8NHQ8 419 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 PRRX2Q99811 253 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 BACH2Q9BYV9 841 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 ODF2LQ9ULJ1 636 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 TECTAO75443 2155 aa13.95□□□□□ -0.18
PTPRF-214ENST00000496043 ABLIM1O14639 778 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 HARSP12081 509 aaKnown RBP13.94□□□□□ -0.18
PTPRF-214ENST00000496043 KCNE1P15382 129 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 SCP2P22307 547 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 GBP2P32456 591 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-214ENST00000496043 RPL9P32969 192 aaKnown RBP13.94□□□□□ -0.18
PTPRF-214ENST00000496043 DDIT3P35638 169 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 MATR3P43243 847 aaKnown RBP eCLIP13.94□□□□□ -0.182e-6■■■□□ 15.7
PTPRF-214ENST00000496043 CACNB1Q02641 598 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-214ENST00000496043 CD300LGQ6UXG3 332 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 HAUS6Q7Z4H7 955 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 GPBP1Q86WP2 473 aa13.94□□□□□ -0.18
PTPRF-214ENST00000496043 MYCT1Q8N699 235 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms