RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM182AQ5T1J6 154 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 TBC1D1Q86TI0 1168 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 MAP4K3Q8IVH8 894 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 FAM71AQ8IYT1 594 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 LRRC34Q8IZ02 419 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 GDAP1Q8TB36 358 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 HVCN1Q96D96 273 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 MRRFQ96E11 262 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 FAM212AQ96EL1 285 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 TRIM7Q9C029 511 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 XPNPEP1Q9NQW7 623 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 CTNNAL1Q9UBT7 734 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 ZNFX1Q9P2E3 1918 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 KCNA2P16389 499 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 CCND2P30279 289 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 GJC1P36383 396 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 SCTRP47872 440 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 LONRF1Q17RB8 773 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 ANGEL2Q5VTE6 544 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 KRT39Q6A163 491 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 SPOPLQ6IQ16 392 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 SV2AQ7L0J3 742 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 PRUNE1Q86TP1 453 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 JAMLQ86YT9 394 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 C12orf56Q8IXR9 622 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 HELQQ8TDG4 1101 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 ZNF653Q96CK0 615 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 DDX23Q9BUQ8 820 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 NUP85Q9BW27 656 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 CYP11B1P15538 503 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 PTPRAP18433 802 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 RPL21P46778 160 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 SP2Q02086 613 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 PRKCEQ02156 737 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 GHRHRQ02643 423 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 SEZ6Q53EL9 994 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 ANKRD20A8PQ5CZ79 823 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 GKAP1Q5VSY0 366 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 SCARA3Q6AZY7 606 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 TTC27Q6P3X3 843 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 CYB5D1Q6P9G0 228 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 TMEM143Q96AN5 459 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 RTN2O75298 545 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 PYGMP11217 842 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 SFNP31947 248 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 PMS2P54278 862 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 HP1BP3Q5SSJ5 553 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 DENND2CQ68D51 928 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 TAS1R3Q7RTX0 852 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 CCDC91Q7Z6B0 441 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 RHOT2Q8IXI1 618 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 CCDC105Q8IYK2 499 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 ZNF280CQ8ND82 737 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 C1orf54Q8WWF1 131 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 NCAPGQ9BPX3 1015 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 CARD9Q9H257 536 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 SLITRK6Q9H5Y7 841 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 ZNF214Q9UL59 606 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 TRPC6Q9Y210 931 aa17.7■□□□□ 0.42
CCDC88B-210ENST00000494566 RGS16O15492 202 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ACOT2P49753 483 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ZNF280AP59817 542 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 KIF2BQ8N4N8 673 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ZNF564Q8TBZ8 553 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ATG4AQ8WYN0 398 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 A1CFQ9NQ94 594 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 PICK1Q9NRD5 415 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ANKEF1Q9NU02 776 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 RAB20Q9NX57 234 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 TPX2Q9ULW0 747 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 SPOPO43791 374 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 STBD1O95210 358 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 PTENP60484 403 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 C6orf89Q6UWU4 347 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 FAM228AQ86W67 206 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 DYDC1Q8WWB3 177 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 SHC3Q92529 594 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ZBTB45Q96K62 511 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 XPO6Q96QU8 1125 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 MYCBPQ99417 103 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 ZSWIM1Q9BR11 485 aa17.69■□□□□ 0.42
CCDC88B-210ENST00000494566 CENPFP49454 3210 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 RFX1P22670 979 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 MFAP3P55082 362 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 ACTR2P61160 394 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CAPN12Q6ZSI9 719 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 SCYL3Q8IZE3 742 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 FBXL13Q8NEE6 735 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 REPS2Q8NFH8 660 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 ERP44Q9BS26 406 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 POLR3FQ9H1D9 316 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 ST6GALNAC4Q9H4F1 302 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 JPH1Q9HDC5 661 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 EXOC7Q9UPT5 735 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 HARSP12081 509 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CNTN2Q02246 1040 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CYP24A1Q07973 514 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 ZBTB41Q5SVQ8 909 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 FUKQ8N0W3 1084 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 PRELID2Q8N945 189 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms