RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CNKSR3Q6P9H4 555 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 SLC35C1Q96A29 364 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 NAP1L5Q96NT1 182 aaPredicted RBP21.03■□□□□ 0.96
USP39-218ENST00000493829 FNBP1Q96RU3 617 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 TSPYL2Q9H2G4 693 aaPredicted RBP21.03■□□□□ 0.96
USP39-218ENST00000493829 LACTBL1A8MY62 500 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 ATF7P17544 494 aaPredicted RBP21.02■□□□□ 0.96
USP39-218ENST00000493829 KYAT1Q16773 422 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 SLC10A6Q3KNW5 377 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 VWA3BQ502W6 1294 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 GLRA4Q5JXX5 417 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 ECHDC2Q86YB7 292 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 SNX27Q96L92 541 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 TRIM5Q9C035 493 aa21.02■□□□□ 0.96
USP39-218ENST00000493829 XPO4Q9C0E2 1151 aaKnown RBP21.02■□□□□ 0.96
USP39-218ENST00000493829 A0A0U1RQF3 1178 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 NFICP08651 508 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 TNNI1P19237 187 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 GCLMP48507 274 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 MRE11P49959 708 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 UBASH3AP57075 661 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 C1orf220Q5T0J3 134 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 SLC24A5Q71RS6 500 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 HACE1Q8IYU2 909 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 PARD3BQ8TEW8 1205 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 ZFP42Q96MM3 310 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 CITO14578 2027 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 MICAL3Q7RTP6 2002 aa21.02■□□□□ 0.95
USP39-218ENST00000493829 C9IYK1 514 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 ENPP3O14638 875 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 MLH1P40692 756 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 FPGSQ05932 587 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 PPP3CAQ08209 521 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 KCNH2Q12809 1159 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 JADE1Q6IE81 842 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 TMEM130Q8N3G9 435 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 CGRRF1Q99675 332 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 TRAIPQ9BWF2 469 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 NDST4Q9H3R1 872 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 C1orf112Q9NSG2 853 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 INTS13Q9NVM9 706 aa21.01■□□□□ 0.95
USP39-218ENST00000493829 LGALS16A8MUM7 142 aa21■□□□□ 0.95
USP39-218ENST00000493829 IL18RAPO95256 599 aa21■□□□□ 0.95
USP39-218ENST00000493829 AFPP02771 609 aaKnown RBP21■□□□□ 0.95
USP39-218ENST00000493829 TFAMQ00059 246 aaKnown RBP21■□□□□ 0.95
USP39-218ENST00000493829 IKBKEQ14164 716 aa21■□□□□ 0.95
USP39-218ENST00000493829 FILIP1LQ4L180 1135 aa21■□□□□ 0.95
USP39-218ENST00000493829 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21■□□□□ 0.95
USP39-218ENST00000493829 AGMOQ6ZNB7 445 aa21■□□□□ 0.95
USP39-218ENST00000493829 EFCAB13Q8IY85 973 aa21■□□□□ 0.95
USP39-218ENST00000493829 TMC2Q8TDI7 906 aa21■□□□□ 0.95
USP39-218ENST00000493829 IL23AQ9NPF7 189 aa21■□□□□ 0.95
USP39-218ENST00000493829 INPP5FQ9Y2H2 1132 aa21■□□□□ 0.95
USP39-218ENST00000493829 A0A1B0GTH6 734 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.99■□□□□ 0.95
USP39-218ENST00000493829 TTC26A0AVF1 554 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 TEX33O43247 280 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 FGFR1P11362 822 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 MYL7Q01449 175 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 CBWD6Q4V339 395 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 CBWD3Q5JTY5 395 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 CBWD5Q5RIA9 395 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 SARM1Q6SZW1 724 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 USP37Q86T82 979 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 RPUSD2Q8IZ73 545 aaKnown RBP20.99■□□□□ 0.95
USP39-218ENST00000493829 OR5B17Q8NGF7 314 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 KIF12Q96FN5 646 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 MTMR12Q9C0I1 747 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 SKIP12755 728 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 EPHB4P54760 987 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 UBXN1Q04323 297 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 PPIGQ13427 754 aaKnown RBP eCLIP20.99■□□□□ 0.954e-7■■□□□ 13.9
USP39-218ENST00000493829 OTOP2Q7RTS6 562 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 MRPL10Q7Z7H8 261 aaKnown RBP20.99■□□□□ 0.95
USP39-218ENST00000493829 PGBD4Q96DM1 585 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 GAD1Q99259 594 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 RSAD1Q9HA92 442 aa20.99■□□□□ 0.95
USP39-218ENST00000493829 ZNF623O75123 536 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 FMO5P49326 533 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 ZNF75DP51815 510 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 AFF1P51825 1210 aaKnown RBP20.98■□□□□ 0.95
USP39-218ENST00000493829 GUCY2FP51841 1108 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 BIRC3Q13489 604 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 TMEM132DQ14C87 1099 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 ZNF598Q86UK7 904 aaKnown RBP20.98■□□□□ 0.95
USP39-218ENST00000493829 WDR49Q8IV35 697 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 ZNF516Q92618 1163 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 ZMAT2Q96NC0 199 aaKnown RBP20.98■□□□□ 0.95
USP39-218ENST00000493829 RPS6KC1Q96S38 1066 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 CRACR2AQ9BSW2 395 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 RTN4Q9NQC3 1192 aaKnown RBP20.98■□□□□ 0.95
USP39-218ENST00000493829 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.98■□□□□ 0.959e-9■■■■■ 111.8
USP39-218ENST00000493829 LRFN2Q9ULH4 789 aa20.98■□□□□ 0.95
USP39-218ENST00000493829 PDCD11Q14690 1871 aaKnown RBP20.97■□□□□ 0.95
USP39-218ENST00000493829 TRIP11Q15643 1979 aa20.97■□□□□ 0.95
USP39-218ENST00000493829 CBFA2T2O43439 604 aa20.97■□□□□ 0.95
USP39-218ENST00000493829 UPP2O95045 317 aa20.97■□□□□ 0.95
USP39-218ENST00000493829 ADCY5O95622 1261 aa20.97■□□□□ 0.95
USP39-218ENST00000493829 PFKMP08237 780 aa20.97■□□□□ 0.95
USP39-218ENST00000493829 TMEM191BP0C7N4 346 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms