RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 LAMP2P13473 410 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 CCT6AP40227 531 aaKnown RBP12.75□□□□□ -0.37
COL6A3-213ENST00000493475 PFKPQ01813 784 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-213ENST00000493475 SPATA31D4Q6ZUB0 917 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 GLYCTKQ8IVS8 523 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 DTWD2Q8NBA8 298 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 ZSCAN31Q96LW9 406 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-213ENST00000493475 CCDC94Q9BW85 323 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-213ENST00000493475 PDZD7Q9H5P4 517 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 GPRC5CQ9NQ84 441 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 SLC38A7Q9NVC3 462 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 MIOSQ9NXC5 875 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 POLIQ9UNA4 740 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 ARID2Q68CP9 1835 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 K7ERI5 159 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 SNPHO15079 494 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 JAK2O60674 1132 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 RECQL4O94761 1208 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 EFEMP2O95967 443 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 C8AP07357 584 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 SPATA31C1P0DKV0 1188 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 DMP1Q13316 513 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-213ENST00000493475 UVSSAQ2YD98 709 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 TTC38Q5R3I4 469 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 KRT79Q5XKE5 535 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 CDR2LQ86X02 465 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-213ENST00000493475 SLC44A3Q8N4M1 653 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 PDCD7Q8N8D1 485 aaKnown RBP12.74□□□□□ -0.37
COL6A3-213ENST00000493475 KCNG4Q8TDN1 519 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 DDX27Q96GQ7 796 aaKnown RBP12.74□□□□□ -0.37
COL6A3-213ENST00000493475 DRC1Q96MC2 740 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 SMOC2Q9H3U7 446 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 SH2B1Q9NRF2 756 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-213ENST00000493475 SNTG2Q9NY99 539 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 LRWD1Q9UFC0 647 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 FBXW11Q9UKB1 542 aa12.74□□□□□ -0.37
COL6A3-213ENST00000493475 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-213ENST00000493475 PRR23AA6NEV1 266 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 LAD1O00515 517 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 MED24O75448 989 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 B3GAT3O94766 335 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 KIF4AO95239 1232 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 PAPLNO95428 1278 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 POU2F2P09086 479 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 MYBP10242 640 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ELF1P32519 619 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ANGPT1Q15389 498 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ZNF174Q15697 407 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 RTP2Q5QGT7 225 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ATF7IP2Q5U623 682 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 CWF19L1Q69YN2 538 aaKnown RBP12.73□□□□□ -0.37
COL6A3-213ENST00000493475 PHLDB3Q6NSJ2 640 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 LILRA6Q6PI73 481 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 DCLRE1AQ6PJP8 1040 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ANKS3Q6ZW76 656 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 NOSTRINQ8IVI9 506 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 GSTCDQ8NEC7 633 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 HASPINQ8TF76 798 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ZNF707Q96C28 371 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-213ENST00000493475 BORCS6Q96GS4 357 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 B3GALT6Q96L58 329 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 MYADMQ96S97 322 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 ARHGEF3Q9NR81 526 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 CDH7Q9ULB5 785 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 CA14Q9ULX7 337 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 DNM3Q9UQ16 869 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 GDAQ9Y2T3 454 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 SIT1Q9Y3P8 196 aa12.73□□□□□ -0.37
COL6A3-213ENST00000493475 RBM19Q9Y4C8 960 aaKnown RBP12.73□□□□□ -0.37
COL6A3-213ENST00000493475 DENND4AQ7Z401 1863 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 CCDC169A6NNP5 214 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 TMEM189-UBE2V1I3L0A0 370 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 LARGE1O95461 756 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 RPL17P18621 184 aaKnown RBP12.72□□□□□ -0.37
COL6A3-213ENST00000493475 GUCY1B3Q02153 619 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 STRN3Q13033 797 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 PDIA5Q14554 519 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 PRSS55Q6UWB4 352 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-213ENST00000493475 FRMD5Q7Z6J6 570 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 CCDC83Q8IWF9 413 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 KCTD17Q8N5Z5 321 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 FBXO18Q8NFZ0 1043 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 SNX29Q8TEQ0 813 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 TCHPQ9BT92 498 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 TIPINQ9BVW5 301 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 MRPL4Q9BYD3 311 aaKnown RBP12.72□□□□□ -0.37
COL6A3-213ENST00000493475 TMEM60Q9H2L4 133 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 BHMT2Q9H2M3 363 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 TBC1D17Q9HA65 648 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 C17orf75Q9HAS0 396 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 SLC2A4RGQ9NR83 387 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 KCNH3Q9ULD8 1083 aa12.72□□□□□ -0.37
COL6A3-213ENST00000493475 TDRD15B5MCY1 1934 aaKnown RBP12.72□□□□□ -0.37
COL6A3-213ENST00000493475 ANHXE9PGG2 379 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 F8W810 466 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 H7C4K7 107 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 NARSO43776 548 aaKnown RBP12.71□□□□□ -0.37
COL6A3-213ENST00000493475 LRG1P02750 347 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 MAGEA9P43362 315 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms