RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GRM5P41594 1212 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 OSTNP61366 133 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 DEFB103AP81534 67 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 CT47A1Q5JQC4 288 aaPredicted RBP11.22□□□□□ -0.61
SKA1-204ENST00000488454 C9orf50Q5SZB4 431 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 FAM117BQ6P1L5 589 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 GLB1LQ6UWU2 654 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 TDHQ8IZJ6 230 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 NELFBQ8WX92 580 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 P2RX5Q93086 422 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 IKZF4Q9H2S9 585 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 KCTD10Q9H3F6 313 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 RPF1Q9H9Y2 349 aaKnown RBP11.22□□□□□ -0.61
SKA1-204ENST00000488454 TOPORSQ9NS56 1045 aaPredicted RBP11.22□□□□□ -0.61
SKA1-204ENST00000488454 SNTG2Q9NY99 539 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 CXXC1Q9P0U4 656 aaPredicted RBP11.22□□□□□ -0.61
SKA1-204ENST00000488454 TRAF3IP3Q9Y228 551 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 GIT1Q9Y2X7 761 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 HES2Q9Y543 173 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 PCDHB3Q9Y5E6 796 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 ZNF233A6NK53 670 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 TISP43B9A030 160 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 RBAK-RBAKDNI3L0D1 243 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 CETN3O15182 167 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 EXTL3O43909 919 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 EXOC3O60645 756 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 FGFR1OPO95684 399 aaKnown RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 CCDC192P0DO97 292 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 AKAP5P24588 427 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 CCNE1P24864 410 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 ADSSP30520 456 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 CYP2J2P51589 502 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 COPS2P61201 443 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 LRRC63Q05C16 580 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 PAK1Q13153 545 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 ADAM9Q13443 819 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 MYBPC2Q14324 1141 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 STX1AQ16623 288 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 TPD52L1Q16890 204 aaPredicted RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 ANKRD40Q6AI12 368 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 CENPPQ6IPU0 288 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 SLC39A4Q6P5W5 647 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 HERC6Q8IVU3 1022 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 GPD1LQ8N335 351 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 XXYLT1Q8NBI6 393 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 SMG8Q8ND04 991 aaKnown RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 URGCPQ8TCY9 931 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 RSPH1Q8WYR4 309 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 ZNF516Q92618 1163 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 LPPQ93052 612 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 RPS6KC1Q96S38 1066 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 YME1L1Q96TA2 773 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 CBWD1Q9BRT8 395 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 FAM213AQ9BRX8 229 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 NAT10Q9H0A0 1025 aaKnown RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 SEMA6BQ9H3T3 888 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 NXF3Q9H4D5 531 aaKnown RBP11.21□□□□□ -0.61
SKA1-204ENST00000488454 RSAD1Q9HA92 442 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 HSPBP1Q9NZL4 362 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 KANSL3Q9P2N6 904 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 FRMD4BQ9Y2L6 1034 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 INSL6Q9Y581 213 aa11.21□□□□□ -0.61
SKA1-204ENST00000488454 MYH11P35749 1972 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 SYCE3A1L190 88 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 GOLGA8IPA6NC78 632 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 GOLGA8JA6NMD2 632 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 ABLIM1O14639 778 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 TLL1O43897 1013 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 NR3C1P04150 777 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 FGFR1P11362 822 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 ACOT2P49753 483 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 FKBP3Q00688 224 aaKnown RBP11.2□□□□□ -0.62
SKA1-204ENST00000488454 POU5F1Q01860 360 aaKnown RBP11.2□□□□□ -0.62
SKA1-204ENST00000488454 EDRF1Q3B7T1 1238 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 ZSCAN23Q3MJ62 389 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 SEZ6Q53EL9 994 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 RASIP1Q5U651 963 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 PRPF38BQ5VTL8 546 aaKnown RBP11.2□□□□□ -0.62
SKA1-204ENST00000488454 CEP135Q66GS9 1140 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 AGMOQ6ZNB7 445 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 ZNF598Q86UK7 904 aaKnown RBP11.2□□□□□ -0.62
SKA1-204ENST00000488454 SLC9A9Q8IVB4 645 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 C12orf56Q8IXR9 622 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 SAAL1Q96ER3 474 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 RAD9AQ99638 391 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 HAPLN2Q9GZV7 340 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 TMEM117Q9H0C3 514 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 PLEKHA5Q9HAU0 1116 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 KLK14Q9P0G3 267 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 RWDD2AQ9UIY3 292 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 CTNND2Q9UQB3 1225 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 INPP5FQ9Y2H2 1132 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 TANC1Q9C0D5 1861 aa11.2□□□□□ -0.62
SKA1-204ENST00000488454 SCN5AQ14524 2016 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 ZMYM2Q9UBW7 1377 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 TBKBP1A7MCY6 615 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 OFD1O75665 1012 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 DGKIO75912 1065 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms