RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CGRRF1Q99675 332 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 TRAIPQ9BWF2 469 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 WNT8AQ9H1J5 351 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 CXCL16Q9H2A7 254 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 GANQ9H2C0 597 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 SIX2Q9NPC8 291 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 CHST12Q9NRB3 414 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 IMPACTQ9P2X3 320 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 PADI3Q9ULW8 664 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 COQ4Q9Y3A0 265 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 UMODL1Q5DID0 1318 aa8.95□□□□□ -0.98
USP4-210ENST00000483212 ANK1P16157 1881 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 RALGAPA2Q2PPJ7 1873 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 TTC26A0AVF1 554 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 TLR3O15455 904 aaKnown RBP8.94□□□□□ -0.98
USP4-210ENST00000483212 LRRN2O75325 713 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 NOL4O94818 638 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 C4BPAP04003 597 aaKnown RBP8.94□□□□□ -0.98
USP4-210ENST00000483212 SLC9A1P19634 815 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 PON1P27169 355 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 GCLMP48507 274 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 FXR1P51114 621 aaKnown RBP eCLIP8.94□□□□□ -0.98
USP4-210ENST00000483212 OSTNP61366 133 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 MYL7Q01449 175 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 APBA1Q02410 837 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 NCBP1Q09161 790 aaKnown RBP8.94□□□□□ -0.98
USP4-210ENST00000483212 PAK2Q13177 524 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 BFSP2Q13515 415 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 ARID5BQ14865 1188 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 KYAT1Q16773 422 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 TMEM132AQ24JP5 1023 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 TCTN1Q2MV58 587 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 ZACNQ401N2 412 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 XKR4Q5GH76 650 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 SCARA3Q6AZY7 606 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 ALKAL1Q6UXT8 129 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 SV2AQ7L0J3 742 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 WDR49Q8IV35 697 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 CXorf38Q8TB03 319 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 LINC01599Q8WXQ3 324 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 SEMA4DQ92854 862 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 VWCEQ96DN2 955 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 SNX27Q96L92 541 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 ADPGKQ9BRR6 497 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 CRACR2AQ9BSW2 395 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 TMEM106CQ9BVX2 250 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 NXF3Q9H4D5 531 aaKnown RBP8.94□□□□□ -0.98
USP4-210ENST00000483212 TMEM8AQ9HCN3 771 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 PLCB1Q9NQ66 1216 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 AJAP1Q9UKB5 411 aaPredicted RBP8.94□□□□□ -0.98
USP4-210ENST00000483212 HES2Q9Y543 173 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 IPPQ9Y573 584 aa8.94□□□□□ -0.98
USP4-210ENST00000483212 A0A1W2PQJ5 194 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 LACTBL1A8MY62 500 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 DCDC2CA8MYV0 355 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 PES1O00541 588 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 STX10O60499 249 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 N4BP1O75113 896 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 IL18RAPO95256 599 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 VNN1O95497 513 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 CXCL10P02778 98 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 NFICP08651 508 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 DLATP10515 647 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 ACTN1P12814 892 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 ATF7P17544 494 aaPredicted RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 EN2P19622 333 aaPredicted RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 MXI1P50539 228 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 NFX1Q12986 1120 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 TRIM14Q14142 442 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 SURF1Q15526 300 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 PLEKHG4Q58EX7 1191 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 TDRD10Q5VZ19 366 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 LMBRD2Q68DH5 695 aaPredicted RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 KRT39Q6A163 491 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 TRIM65Q6PJ69 517 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 GBP6Q6ZN66 633 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 CCDC186Q7Z3E2 898 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 APBB1IPQ7Z5R6 666 aaPredicted RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 NECAB2Q7Z6G3 386 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 MRPL10Q7Z7H8 261 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 RTN4RL1Q86UN2 441 aaPredicted RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 TC2NQ8N9U0 490 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 TAS1R2Q8TE23 839 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 BAP1Q92560 729 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 ACAP3Q96P50 834 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 CCDC94Q9BW85 323 aaPredicted RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 LSM14BQ9BX40 385 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 NAA15Q9BXJ9 866 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 INTS2Q9H0H0 1204 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 ASB7Q9H672 318 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 MMRN2Q9H8L6 949 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 RPF1Q9H9Y2 349 aaKnown RBP8.93□□□□□ -0.98
USP4-210ENST00000483212 PLEKHA5Q9HAU0 1116 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 FAM105AQ9NUU6 356 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 SNTG2Q9NY99 539 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 GCNT4Q9P109 453 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 CNTN3Q9P232 1028 aa8.93□□□□□ -0.98
USP4-210ENST00000483212 MEIS3P2A8K0S8 358 aa8.92□□□□□ -0.98
USP4-210ENST00000483212 C9IYK1 514 aa8.92□□□□□ -0.98
USP4-210ENST00000483212 MFAP3LO75121 409 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms