RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TAF4BQ92750 862 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 GCC1Q96CN9 775 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 CLIC6Q96NY7 704 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 TUBGCP5Q96RT8 1024 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 C11orf84Q9BUA3 381 aaPredicted RBP4.73□□□□□ -1.65
VPS41-212ENST00000482217 BTBD2Q9BX70 525 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 AMNQ9BXJ7 453 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 SLC13A1Q9BZW2 595 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 ATP6V0A4Q9HBG4 840 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 TCF7L1Q9HCS4 588 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 TOPORSQ9NS56 1045 aaPredicted RBP4.73□□□□□ -1.65
VPS41-212ENST00000482217 UCKL1Q9NWZ5 548 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 ARHGAP20Q9P2F6 1191 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 PDP2Q9P2J9 529 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 RBPJLQ9UBG7 517 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 RCAN3Q9UKA8 241 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 RRP15Q9Y3B9 282 aaKnown RBP4.73□□□□□ -1.65
VPS41-212ENST00000482217 TTLL3Q9Y4R7 772 aa4.73□□□□□ -1.65
VPS41-212ENST00000482217 ITIH6Q6UXX5 1313 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 ELL2O00472 640 aaPredicted RBP4.72□□□□□ -1.65
VPS41-212ENST00000482217 AREL1O15033 823 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 MT-CO1P00395 513 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 PI3P19957 117 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 THBS2P35442 1172 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 KRT85P78386 507 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 CAP1Q01518 475 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 SLC6A3Q01959 620 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 SSPNQ14714 243 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 PLCB4Q15147 1175 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 STILQ15468 1287 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 INAVAQ3KP66 663 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 MFSD4BQ5TF39 518 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 SPATA1Q5VX52 437 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 SLFN12LQ6IEE8 588 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 C16orf87Q6PH81 154 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 CCDC73Q6ZRK6 1079 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 CXXC5Q7LFL8 322 aaKnown RBP4.72□□□□□ -1.65
VPS41-212ENST00000482217 KANSL1Q7Z3B3 1105 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 GPR155Q7Z3F1 870 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 CXorf67Q86X51 503 aaPredicted RBP4.72□□□□□ -1.65
VPS41-212ENST00000482217 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS41-212ENST00000482217 CPA6Q8N4T0 437 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 SPATA5Q8NB90 893 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 LMBR1Q8WVP7 490 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 N4BP2L2Q92802 583 aaPredicted RBP4.72□□□□□ -1.65
VPS41-212ENST00000482217 TTC17Q96AE7 1141 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 CHCHD6Q9BRQ6 235 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 DESI2Q9BSY9 194 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 OR10A5Q9H207 317 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 ELAC1Q9H777 363 aaKnown RBP4.72□□□□□ -1.65
VPS41-212ENST00000482217 VTA1Q9NP79 307 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 C14orf119Q9NWQ9 140 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 NKIRAS2Q9NYR9 191 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 SEL1LQ9UBV2 794 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 GJD2Q9UKL4 321 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 PTPN22Q9Y2R2 807 aa4.72□□□□□ -1.65
VPS41-212ENST00000482217 RRN3P2A6NIE6 340 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 GOLGA8AA7E2F4 631 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 GOLGA8BA8MQT2 603 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 AHCYL1O43865 530 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 PRPF6O94906 941 aaKnown RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 CFBP00751 764 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 SLC4A1P02730 911 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 MYBL2P10244 700 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 ATF7P17544 494 aaPredicted RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 RHCEP18577 417 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 APEX1P27695 318 aaKnown RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 CTNNA1P35221 906 aaKnown RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 GRK6P43250 576 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 TM4SF4P48230 202 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 MANFP55145 182 aaKnown RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 NAP1L1P55209 391 aaKnown RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 BCAR1P56945 870 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 HTRA3P83110 453 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 RHDQ02161 417 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 PDCD1Q15116 288 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 FSCN1Q16658 493 aaKnown RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 PRAMEF9Q5VWM5 478 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 FAAH2Q6GMR7 532 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 KIAA1841Q6NSI8 718 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 B3GNT9Q6UX72 402 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 ENOSF1Q7L5Y1 443 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 DAAM2Q86T65 1068 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 TEX11Q8IYF3 940 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 TMEFF1Q8IYR6 380 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 NRSN1Q8IZ57 195 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 TEX9Q8N6V9 391 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 NAT8LQ8N9F0 302 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 OR8H1Q8NGG4 311 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 WDR48Q8TAF3 677 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 MGARPQ8TDB4 240 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 FERMT2Q96AC1 680 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 DACT3Q96B18 629 aaPredicted RBP4.71□□□□□ -1.66
VPS41-212ENST00000482217 FUBP3Q96I24 572 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS41-212ENST00000482217 UBXN10Q96LJ8 280 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 NOX5Q96PH1 765 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 ORAI2Q96SN7 254 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 MYL10Q9BUA6 226 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 SLC26A6Q9BXS9 759 aa4.71□□□□□ -1.66
VPS41-212ENST00000482217 MRPL9Q9BYD2 267 aaKnown RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms