RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 ITGB3BPQ13352 177 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-209ENST00000479532 PPP2R5CQ13362 524 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 KCNA10Q16322 511 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 HSDL1Q3SXM5 330 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 LCE4AQ5TA78 99 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 HAUS3Q68CZ6 603 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 NCAPH2Q6IBW4 605 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 NECAB2Q7Z6G3 386 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 CKAP2LQ8IYA6 745 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 KLHDC9Q8NEP7 349 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 KCNG4Q8TDN1 519 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 GLG1Q92896 1179 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 ATP6V0A1Q93050 837 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 FERMT2Q96AC1 680 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 TMEM74Q96NL1 305 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 MTMR9Q96QG7 549 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 GPR20Q99678 358 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 MTG1Q9BT17 334 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-209ENST00000479532 CLEC4MQ9H2X3 399 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-209ENST00000479532 UNC45AQ9H3U1 944 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 C11orf49Q9H6J7 331 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 STARD7Q9NQZ5 370 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 ZNF302Q9NR11 478 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 DISC1Q9NRI5 854 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 PCDHA10Q9Y5I2 948 aa6.89□□□□□ -1.31
SF3B1-209ENST00000479532 MYH9P35579 1960 aaKnown RBP6.89□□□□□ -1.31
SF3B1-209ENST00000479532 MROH7Q68CQ1 1323 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 EMSYQ7Z589 1322 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 KDM3AQ9Y4C1 1321 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 DHX15O43143 795 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 EDIL3O43854 480 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PPP6R2O75170 966 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 LGALS2P05162 132 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 SUPT20HL2P0C7V6 817 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 GNAT1P11488 350 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 SPINK2P20155 84 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 MSNP26038 577 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 DNAJA1P31689 397 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 MCM4P33991 863 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 LONP1P36776 959 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 TECP42680 631 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 LIG3P49916 1009 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 STAT5BP51692 787 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 ACLYP53396 1101 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 CHMP4BP1P59074 171 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PURAQ00577 322 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 CEBPZQ03701 1054 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PCDH1Q08174 1060 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PAK2Q13177 524 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PKP1Q13835 747 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PDIA5Q14554 519 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 EPHA7Q15375 998 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 KRT79Q5XKE5 535 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PLPPR4Q7Z2D5 763 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 RASSF8Q8NHQ8 419 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 HAS1Q92839 578 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 CDK5RAP3Q96JB5 506 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 FAM167AQ96KS9 214 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 AK8Q96MA6 479 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 CCDC43Q96MW1 224 aaKnown RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 UIMC1Q96RL1 719 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 SPON2Q9BUD6 331 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 SENP6Q9GZR1 1112 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 SCAND2PQ9GZW5 306 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-209ENST00000479532 TMEM60Q9H2L4 133 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 ERAP1Q9NZ08 941 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 FRRS1LQ9P0K9 344 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 GABBR1Q9UBS5 961 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 LRWD1Q9UFC0 647 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 PRKAG2Q9UGJ0 569 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 ADAMTS1Q9UHI8 967 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 SOX13Q9UN79 622 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 CLIC4Q9Y696 253 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 LOXHD1Q8IVV2 1947 aa6.88□□□□□ -1.31
SF3B1-209ENST00000479532 A0A1W2PQ45 241 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 GSTTP1A0A1W2PQM5 241 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 A0A1W2PQY0 241 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 CCDC66A2RUB6 948 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 VWA3AA6NCI4 1184 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 MYADML2A6NDP7 307 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 GOLGA6L4A6NEF3 574 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SPTLC2O15270 562 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 TLR3O15455 904 aaKnown RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SLC26A4O43511 780 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 PAGE1O75459 146 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 F2P00734 622 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 ZNF286BP0CG31 522 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 EN2P19622 333 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 CDK11BP21127 795 aaKnown RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 MUTP22033 750 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 DDIT3P35638 169 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 UBA7P41226 1012 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 QARSP47897 775 aaKnown RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 NASPP49321 788 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SOX10P56693 466 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 PSMC5P62195 406 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 PTPN11Q06124 597 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 GABPB1Q06547 395 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SLC39A14Q15043 492 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 KIAA0753Q2KHM9 967 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms