RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 SPATA31D4Q6ZUB0 917 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 SMG7Q92540 1137 aaKnown RBP16.6■□□□□ 0.25
VARS-223ENST00000474643 TTPALQ9BTX7 342 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 MMTAG2Q9BU76 263 aaKnown RBP16.6■□□□□ 0.25
VARS-223ENST00000474643 CCDC94Q9BW85 323 aaPredicted RBP16.6■□□□□ 0.25
VARS-223ENST00000474643 GPR62Q9BZJ7 368 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 CCDC113Q9H0I3 377 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 PLEKHA4Q9H4M7 779 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 TOPORSQ9NS56 1045 aaPredicted RBP16.6■□□□□ 0.25
VARS-223ENST00000474643 TFIP11Q9UBB9 837 aaKnown RBP16.6■□□□□ 0.25
VARS-223ENST00000474643 FBXL21Q9UKT6 434 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 USP20Q9Y2K6 914 aa16.6■□□□□ 0.25
VARS-223ENST00000474643 MYH11P35749 1972 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 LILRB3O75022 631 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 HIP1RO75146 1068 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
VARS-223ENST00000474643 MATR3P43243 847 aaKnown RBP eCLIP16.59■□□□□ 0.25
VARS-223ENST00000474643 NHLH1Q02575 133 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 STRN3Q13033 797 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 PKP1Q13835 747 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 PTPAQ15257 358 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 PDXDC1Q6P996 788 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 CYP26C1Q6V0L0 522 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 ALYREFQ86V81 257 aaKnown RBP16.59■□□□□ 0.25
VARS-223ENST00000474643 MRPL4Q9BYD3 311 aaKnown RBP16.59■□□□□ 0.25
VARS-223ENST00000474643 RXFP1Q9HBX9 757 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 CACNG4Q9UBN1 327 aa16.59■□□□□ 0.25
VARS-223ENST00000474643 TECTAO75443 2155 aa16.58■□□□□ 0.25
VARS-223ENST00000474643 SLC26A4O43511 780 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 TGM5O43548 720 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 TRAPPC3O43617 180 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 RFPL2O75678 378 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 KIF4AO95239 1232 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 BRD1O95696 1058 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 HARSP12081 509 aaKnown RBP16.58■□□□□ 0.24
VARS-223ENST00000474643 RPL17P18621 184 aaKnown RBP16.58■□□□□ 0.24
VARS-223ENST00000474643 NPTX2P47972 431 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 SMTNP53814 917 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 GRIN1Q05586 938 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 RAD51AP2Q09MP3 1159 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 SLC39A14Q15043 492 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 GLRA4Q5JXX5 417 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 SPECC1Q5M775 1068 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 KRI1Q8N9T8 703 aaKnown RBP16.58■□□□□ 0.24
VARS-223ENST00000474643 GSTCDQ8NEC7 633 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 CMASQ8NFW8 434 aaPredicted RBP16.58■□□□□ 0.24
VARS-223ENST00000474643 HDAC7Q8WUI4 952 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 ASIC4Q96FT7 647 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 PNMA5Q96PV4 448 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 PAAF1Q9BRP4 392 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 CHST7Q9NS84 486 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 FNIP2Q9P278 1114 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 CCDC39Q9UFE4 941 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 KCNG1Q9UIX4 513 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 SRPRBQ9Y5M8 271 aaKnown RBP16.58■□□□□ 0.24
VARS-223ENST00000474643 CLUHO75153 1309 aa16.58■□□□□ 0.24
VARS-223ENST00000474643 TTLL13PA6NNM8 815 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 SPTLC2O15270 562 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 B3GAT3O94766 335 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 OSTNP61366 133 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 DHX8Q14562 1220 aaKnown RBP16.57■□□□□ 0.24
VARS-223ENST00000474643 PSMD5Q16401 504 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 HYIQ5T013 277 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 EEF1DP3Q658K8 133 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 PRSS55Q6UWB4 352 aaPredicted RBP16.57■□□□□ 0.24
VARS-223ENST00000474643 GET4Q7L5D6 327 aaPredicted RBP16.57■□□□□ 0.24
VARS-223ENST00000474643 KCNK18Q7Z418 384 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 KCTD17Q8N5Z5 321 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 CLIC6Q96NY7 704 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 TIPINQ9BVW5 301 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 IRF2BPLQ9H1B7 796 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 C17orf75Q9HAS0 396 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 FBXO2Q9UK22 296 aaPredicted RBP16.57■□□□□ 0.24
VARS-223ENST00000474643 CFAP45Q9UL16 551 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 POLIQ9UNA4 740 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 WDFY4Q6ZS81 3184 aa16.57■□□□□ 0.24
VARS-223ENST00000474643 STK25O00506 426 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 PTGESO14684 152 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 PLA2G4BP0C869 781 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 PLCG1P19174 1290 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 DDIT3P35638 169 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 NASPP49321 788 aaPredicted RBP16.56■□□□□ 0.24
VARS-223ENST00000474643 MRE11P49959 708 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 TDGQ13569 410 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 KARSQ15046 597 aaKnown RBP16.56■□□□□ 0.24
VARS-223ENST00000474643 GPR65Q8IYL9 337 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 RNF168Q8IYW5 571 aaPredicted RBP16.56■□□□□ 0.24
VARS-223ENST00000474643 LINC00301Q8NCQ3 95 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 FLCNQ8NFG4 579 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 BICD1Q96G01 975 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 UROC1Q96N76 676 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 RUSC1Q9BVN2 902 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 WDR6Q9NNW5 1121 aaKnown RBP16.56■□□□□ 0.24
VARS-223ENST00000474643 SLC38A7Q9NVC3 462 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 ZDHHC7Q9NXF8 308 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 ANKFY1Q9P2R3 1169 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 CIZ1Q9ULV3 898 aaPredicted RBP16.56■□□□□ 0.24
VARS-223ENST00000474643 TNFSF13BQ9Y275 285 aa16.56■□□□□ 0.24
VARS-223ENST00000474643 SLC16A4O15374 487 aa16.55■□□□□ 0.24
VARS-223ENST00000474643 YEATS4O95619 227 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms