RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 HIC1Q14526 733 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 SNX17Q15036 470 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 ZACNQ401N2 412 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 EEF1DP3Q658K8 133 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 LHX8Q68G74 356 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 GDF6Q6KF10 455 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-205ENST00000473099 SLC27A1Q6PCB7 646 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 WDR59Q6PJI9 974 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 C15orf39Q6ZRI6 1047 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 SV2AQ7L0J3 742 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 ENOSF1Q7L5Y1 443 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 CD302Q8IX05 232 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 TXLNBQ8N3L3 684 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 NT5C1BQ96P26 610 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 PPP1R16BQ96T49 567 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 OSMRQ99650 979 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 CELF4Q9BZC1 486 aaKnown RBP13.87□□□□□ -0.19
VPS13D-205ENST00000473099 ASB7Q9H672 318 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 PDE11AQ9HCR9 933 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 RAB20Q9NX57 234 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 FHOD1Q9Y613 1164 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 EPN1Q9Y6I3 576 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-205ENST00000473099 SOWAHDA6NJG2 315 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 C4BPAP04003 597 aaKnown RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 MYCNP04198 464 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 ACTN1P12814 892 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 CLCN1P35523 988 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 GRM5P41594 1212 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 PRKCIP41743 596 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 JAM2P57087 298 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 KRT83P78385 493 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 ZNF200P98182 395 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 MLLT1Q03111 559 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 TMEM62Q0P6H9 643 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 PTK7Q13308 1070 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 MAPK8IP2Q13387 824 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 ASIC2Q16515 512 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 PTGISQ16647 500 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 DUOXA2Q1HG44 320 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 WDR44Q5JSH3 913 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 E4F1Q66K89 784 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 CTU1Q7Z7A3 348 aaKnown RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 THNSL1Q8IYQ7 743 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 ANKRD36BP1Q96IX9 119 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 CCDC42Q96M95 316 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 TSPAN18Q96SJ8 248 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 CCDC94Q9BW85 323 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 IMPG2Q9BZV3 1241 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 DEF6Q9H4E7 631 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 LUC7LQ9NQ29 371 aaKnown RBP13.86□□□□□ -0.19
VPS13D-205ENST00000473099 DNAJC12Q9UKB3 198 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 GINS2Q9Y248 185 aa13.86□□□□□ -0.19
VPS13D-205ENST00000473099 A0A0U1RQG5 324 aaPredicted RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 EIF3CLB5ME19 914 aaKnown RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 GFPT2O94808 682 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 NDUFA10O95299 355 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 TNNC2P02585 160 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 STAG3L1P0CL83 205 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 SOX5P35711 763 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 TNFSF9P41273 254 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 PIK3CAP42336 1068 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 MFAP3P55082 362 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 BIRC3Q13489 604 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 ENOX2Q16206 610 aaKnown RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 TDRD12Q587J7 1177 aaKnown RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 ZBTB41Q5SVQ8 909 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 IQCEQ6IPM2 695 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 RAD9BQ6WBX8 426 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 VPS36Q86VN1 386 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 JAKMIP2Q96AA8 810 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 CPB2Q96IY4 423 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 ACAP3Q96P50 834 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 POP1Q99575 1024 aaKnown RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 EIF3CQ99613 913 aaKnown RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 CHP1Q99653 195 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 NHEJ1Q9H9Q4 299 aaPredicted RBP13.85□□□□□ -0.19
VPS13D-205ENST00000473099 PLEKHA5Q9HAU0 1116 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 C1orf112Q9NSG2 853 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 PHF24Q9UPV7 400 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 NOD1Q9Y239 953 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 PPP2R2CQ9Y2T4 447 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 CDY2AQ9Y6F7 541 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 SQORQ9Y6N5 450 aa13.85□□□□□ -0.19
VPS13D-205ENST00000473099 F8VZ95 297 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 DNM1LO00429 736 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 PHACTR2O75167 634 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 CSDE1O75534 798 aaKnown RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 HLA-DRAP01903 254 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 TMEM191BP0C7N4 346 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 HOXA11P31270 313 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 GCNT1Q02742 428 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 KLHL30Q0D2K2 578 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 DRAP1Q14919 205 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 SPA17Q15506 151 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 TDRD10Q5VZ19 366 aaKnown RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 FAM43BQ6ZT52 329 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 SLC43A3Q8NBI5 491 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 TAS1R2Q8TE23 839 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 ZNF516Q92618 1163 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 FAXDC2Q96IV6 333 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms