RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZDHHC7Q9NXF8 308 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 TNFSF13BQ9Y275 285 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 CLUHO75153 1309 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 CCDC169A6NNP5 214 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 HIP1RO75146 1068 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 MYBP10242 640 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 ATP2C1P98194 919 aaPredicted RBP18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 DMP1Q13316 513 aaPredicted RBP18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 FAM171A1Q5VUB5 890 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 RINT1Q6NUQ1 792 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 C1orf186Q6ZWK4 172 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 PIK3R5Q8WYR1 880 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 RUSC1Q9BVN2 902 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 NT5C3AQ9H0P0 336 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 ARHGAP28Q9P2N2 729 aa18.22■□□□□ 0.51
CCDC28B-204ENST00000469003 TRIP11Q15643 1979 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 GFRA3O60609 400 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 N4BP1O75113 896 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 GJB2P29033 226 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 NUBP1P53384 320 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 TCF15Q12870 199 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 MAPK7Q13164 816 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 TDGQ13569 410 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 PSMD5Q16401 504 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 HYIQ5T013 277 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 KCNK18Q7Z418 384 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 CEP57Q86XR8 500 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 LNX1Q8TBB1 728 aaPredicted RBP18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 PPP1R10Q96QC0 940 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 ACO2Q99798 780 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 TIPINQ9BVW5 301 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 C17orf75Q9HAS0 396 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 UPF2Q9HAU5 1272 aaKnown RBP18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 KCNK12Q9HB15 430 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 KMT5AQ9NQR1 393 aa18.21■□□□□ 0.51
CCDC28B-204ENST00000469003 VWA8A3KMH1 1905 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 H3BQV1 296 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 TMEM189-UBE2V1I3L0A0 370 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 CD2BP2O95400 341 aaKnown RBP18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 GRM5P41594 1212 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 GLRA4Q5JXX5 417 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 PDXDC1Q6P996 788 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 TAS1R3Q7RTX0 852 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 KCTD17Q8N5Z5 321 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 UROC1Q96N76 676 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 CLSTN3Q9BQT9 956 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 CCDC94Q9BW85 323 aaPredicted RBP18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 MRPL4Q9BYD3 311 aaKnown RBP18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 PRKD2Q9BZL6 878 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 CDT1Q9H211 546 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 PIDD1Q9HB75 910 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 PTPRHQ9HD43 1115 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 FAM86C1Q9NVL1 165 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 IGSF9Q9P2J2 1179 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 FBXW11Q9UKB1 542 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 DUSP12Q9UNI6 340 aa18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 RBM19Q9Y4C8 960 aaKnown RBP18.2■□□□□ 0.5
CCDC28B-204ENST00000469003 ZMYND10O75800 440 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 GUCY2CP25092 1073 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 GBP2P32456 591 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 MCM2P49736 904 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 YARSP54577 528 aaKnown RBP18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 ZNF568Q3ZCX4 644 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 DCLRE1AQ6PJP8 1040 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 PNMA5Q96PV4 448 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 TOPORSQ9NS56 1045 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 EPS15L1Q9UBC2 864 aa18.19■□□□□ 0.5
CCDC28B-204ENST00000469003 DOCK8Q8NF50 2099 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 SMIM28A0A1B0GU29 152 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 FGFR3P22607 806 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 CLCNKBP51801 687 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 ZRSR1Q15695 479 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 XKR4Q5GH76 650 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 ARL6IP4Q66PJ3 421 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 ALKAL1Q6UXT8 129 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 CEP120Q8N960 986 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 SYT2Q8N9I0 419 aaPredicted RBP18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 MYADMQ96S97 322 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 NTPCRQ9BSD7 190 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 TARS2Q9BW92 718 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 IRF2BPLQ9H1B7 796 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 MFSD1Q9H3U5 465 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 KCNG1Q9UIX4 513 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 RIF1Q5UIP0 2472 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 MYH11P35749 1972 aa18.18■□□□□ 0.5
CCDC28B-204ENST00000469003 VWA3AA6NCI4 1184 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 SFI1A8K8P3 1242 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 ABLIM1O14639 778 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 SLC16A4O15374 487 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 B3GAT3O94766 335 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 HNRNPA1P09651 372 aaKnown RBP eCLIP18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 MCF2P10911 925 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 PROZP22891 400 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 FOXK2Q01167 660 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 UPP1Q16831 310 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 LIN9Q5TKA1 542 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 ASTLQ6HA08 431 aaPredicted RBP18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 MPZL3Q6UWV2 235 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 CD300LGQ6UXG3 332 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms