RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 POU3F3P20264 500 aaPredicted RBP12.73□□□□□ -0.37
CUX1-207ENST00000465461 YARSP54577 528 aaKnown RBP12.73□□□□□ -0.37
CUX1-207ENST00000465461 FAM160A1Q05DH4 1040 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 DSC1Q08554 894 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 GRIK3Q13003 919 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 NAB2Q15742 525 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 CSPP1Q1MSJ5 1256 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 ALKAL1Q6UXT8 129 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 EPM2AIP1Q7L775 607 aaPredicted RBP12.73□□□□□ -0.37
CUX1-207ENST00000465461 ADGRD2Q7Z7M1 963 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 KIAA0895Q8NCT3 520 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 ZNF507Q8TCN5 953 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 MICAL1Q8TDZ2 1067 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 HASPINQ8TF76 798 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 NOC3LQ8WTT2 800 aaKnown RBP12.73□□□□□ -0.37
CUX1-207ENST00000465461 SCFD1Q8WVM8 642 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 POMGNT1Q8WZA1 660 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 HVCN1Q96D96 273 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 MRPL38Q96DV4 380 aaKnown RBP12.73□□□□□ -0.37
CUX1-207ENST00000465461 FAM212AQ96EL1 285 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 SAAL1Q96ER3 474 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 IGSF21Q96ID5 467 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 SNX27Q96L92 541 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 CBWD1Q9BRT8 395 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 VN1R3Q9BXE9 311 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 EXOC1Q9NV70 894 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 MARCH5Q9NX47 278 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 EXOC7Q9UPT5 735 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 CHD7Q9P2D1 2997 aa12.73□□□□□ -0.37
CUX1-207ENST00000465461 PRRC2BQ5JSZ5 2229 aaKnown RBP12.73□□□□□ -0.37
CUX1-207ENST00000465461 CLIC2O15247 247 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 OGTO15294 1046 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 SCP2P22307 547 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 GTF2F1P35269 517 aaKnown RBP eCLIP12.72□□□□□ -0.37
CUX1-207ENST00000465461 PLCB3Q01970 1234 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 SOX4Q06945 474 aaPredicted RBP12.72□□□□□ -0.37
CUX1-207ENST00000465461 POSTNQ15063 836 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 ENOX2Q16206 610 aaKnown RBP12.72□□□□□ -0.37
CUX1-207ENST00000465461 PTPROQ16827 1216 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 TCEAL5Q5H9L2 206 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 TAS1R1Q7RTX1 841 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 RBM23Q86U06 439 aaKnown RBP12.72□□□□□ -0.37
CUX1-207ENST00000465461 TMEM87AQ8NBN3 555 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 AUTS2Q8WXX7 1259 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 C18orf25Q96B23 403 aaPredicted RBP12.72□□□□□ -0.37
CUX1-207ENST00000465461 PPP1R10Q96QC0 940 aaKnown RBP12.72□□□□□ -0.37
CUX1-207ENST00000465461 TMEM175Q9BSA9 504 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 TMEM206Q9H813 350 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 AGO2Q9UKV8 859 aaKnown RBP12.72□□□□□ -0.37
CUX1-207ENST00000465461 STYXL1Q9Y6J8 313 aa12.72□□□□□ -0.37
CUX1-207ENST00000465461 LACTBL1A8MY62 500 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 PER2O15055 1255 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 TGFB1I1O43294 461 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 CLTAP09496 248 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 ABCD1P33897 745 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 CA8P35219 290 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 GUCY2FP51841 1108 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 WNT7BP56706 349 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 KRT17Q04695 432 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 TUSC3Q13454 348 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 ALCAMQ13740 583 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 SKIV2LQ15477 1246 aaKnown RBP12.71□□□□□ -0.37
CUX1-207ENST00000465461 XKR4Q5GH76 650 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 PLPP4Q5VZY2 271 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 ISM2Q6H9L7 571 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 SLFN12LQ6IEE8 588 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 CRELD2Q6UXH1 353 aaPredicted RBP12.71□□□□□ -0.37
CUX1-207ENST00000465461 VPS52Q8N1B4 723 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 RSPH1Q8WYR4 309 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 TMEM169Q96HH4 297 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 B3GALT6Q96L58 329 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 TCF25Q9BQ70 676 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 FAM213AQ9BRX8 229 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 IGFLR1Q9H665 355 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 RPF1Q9H9Y2 349 aaKnown RBP12.71□□□□□ -0.37
CUX1-207ENST00000465461 TLR9Q9NR96 1032 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 TOPORSQ9NS56 1045 aaPredicted RBP12.71□□□□□ -0.37
CUX1-207ENST00000465461 LMCD1Q9NZU5 365 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 CNTN3Q9P232 1028 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 CPSF3Q9UKF6 684 aaKnown RBP12.71□□□□□ -0.37
CUX1-207ENST00000465461 MAPK8IP1Q9UQF2 711 aa12.71□□□□□ -0.37
CUX1-207ENST00000465461 HIDE1A8MVS5 230 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 FSCN2O14926 492 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 EIF3DO15371 548 aaKnown RBP eCLIP12.7□□□□□ -0.38
CUX1-207ENST00000465461 KIF4AO95239 1232 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 PPM1AP35813 382 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 CLCNKBP51801 687 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 ARMCX5Q6P1M9 558 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 STXBP4Q6ZWJ1 553 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 TMC7Q7Z402 723 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 SMYD4Q8IYR2 804 aaPredicted RBP12.7□□□□□ -0.38
CUX1-207ENST00000465461 KIF12Q96FN5 646 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 FAM84AQ96KN4 292 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 LMAN2LQ9H0V9 348 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 NSUN3Q9H649 340 aaKnown RBP12.7□□□□□ -0.38
CUX1-207ENST00000465461 ENTPD7Q9NQZ7 604 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 TUBGCP4Q9UGJ1 667 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 PUF60Q9UHX1 559 aaKnown RBP12.7□□□□□ -0.38
CUX1-207ENST00000465461 MYO7AQ13402 2215 aa12.7□□□□□ -0.38
CUX1-207ENST00000465461 CITO14578 2027 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms