RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TMEM52Q8NDY8 209 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 KLHDC9Q8NEP7 349 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 BRF1Q92994 677 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 FAM227BQ96M60 508 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 FGD4Q96M96 766 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 IRF2BPLQ9H1B7 796 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 RWDD1Q9H446 243 aaPredicted RBP8.52□□□□□ -1.05
USP54-208ENST00000461520 SPC25Q9HBM1 224 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 INCENPQ9NQS7 918 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 STARD7Q9NQZ5 370 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 TCP11L1Q9NUJ3 509 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 PRR13Q9NZ81 148 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 ISY1Q9ULR0 285 aaKnown RBP8.52□□□□□ -1.05
USP54-208ENST00000461520 EYSQ5T1H1 3165 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 A0A0D9SFI3 127 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 TRIM43BA6NCK2 446 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 NMT2O60551 498 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 SEMA7AO75326 666 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 GSNP06396 782 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 CLTBP09497 229 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 PCP11498 1178 aaKnown RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 PNLIPP16233 465 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 VAMP1P23763 118 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 NT5C2P49902 561 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 ACLYP53396 1101 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 GJA9P57773 515 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 ZNF445P59923 1031 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 SRSF3P84103 164 aaKnown RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 SHHQ15465 462 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 CCDC144BQ3MJ40 725 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 RTP2Q5QGT7 225 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 C9orf50Q5SZB4 431 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 CCSAPQ6IQ19 270 aaPredicted RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 GALNT18Q6P9A2 607 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 BTNL9Q6UXG8 535 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 ANKRD33Q7Z3H0 272 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 LSRQ86X29 649 aaPredicted RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 FAM133AQ8N9E0 248 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 PCSK9Q8NBP7 692 aaKnown RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 DCAF4Q8WV16 495 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 BADQ92934 168 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 TRIM43Q96BQ3 446 aaPredicted RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 GLT1D1Q96MS3 346 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 TTC14Q96N46 770 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 CDX2Q99626 313 aaPredicted RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 LNPKQ9C0E8 428 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 UPF3AQ9H1J1 476 aaKnown RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 A1CFQ9NQ94 594 aaKnown RBP8.51□□□□□ -1.05
USP54-208ENST00000461520 HOMER2Q9NSB8 354 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 RNF146Q9NTX7 359 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 EFR3BQ9Y2G0 817 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 TAF6LQ9Y6J9 622 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 ELP1O95163 1332 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 MROH7Q68CQ1 1323 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 CCDC171Q6TFL3 1326 aa8.51□□□□□ -1.05
USP54-208ENST00000461520 ASB14A6NK59 587 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 H0Y8X5 98 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 KIAA0355O15063 1070 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 ADCY6O43306 1168 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 PQBP1O60828 265 aaKnown RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 ASGR1P07306 291 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 GSTM1P09488 218 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 C6orf222P0C671 652 aaPredicted RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 TOP1P11387 765 aaKnown RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 ALAS1P13196 640 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 NKX3-2P78367 333 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 CNTN2Q02246 1040 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 RRP12Q5JTH9 1297 aaKnown RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 CCDC174Q6PII3 467 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 ZNF589Q86UQ0 364 aaPredicted RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 CHD1LQ86WJ1 897 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 MAFAQ8NHW3 353 aaPredicted RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 RILPL2Q969X0 211 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 TMEM47Q9BQJ4 181 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 SLC12A9Q9BXP2 914 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 KATNBL1Q9H079 304 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 RANBP17Q9H2T7 1088 aaKnown RBP8.5□□□□□ -1.05
USP54-208ENST00000461520 GP6Q9HCN6 339 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 TOMM22Q9NS69 142 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 PNMA2Q9UL42 364 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 CCPG1Q9ULG6 757 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 ZNF451Q9Y4E5 1061 aa8.5□□□□□ -1.05
USP54-208ENST00000461520 MYADML2A6NDP7 307 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 ICAM1P05362 532 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 PRKCAP17252 672 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 SDSP20132 328 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 ITGB8P26012 769 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 CDK7P50613 346 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 NUCB1Q02818 461 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 TNFAIP2Q03169 654 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 CCDC96Q2M329 555 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 ANKRD39Q53RE8 183 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 AKNAD1Q5T1N1 836 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 MFSD6Q6ZSS7 791 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 RASGRP2Q7LDG7 609 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 SLCO6A1Q86UG4 719 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 CHMP4CQ96CF2 233 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 RNF41Q9H4P4 317 aaPredicted RBP8.49□□□□□ -1.05
USP54-208ENST00000461520 CYP39A1Q9NYL5 469 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 TTC28Q96AY4 2481 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms