RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PLOD2O00469 737 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 NDC80O14777 642 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 CTIFO43310 598 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP8B1O43520 1251 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 USP2O75604 605 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 CAPN3P20807 821 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 GJA9P57773 515 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 PHEXP78562 749 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 CCNG2Q16589 344 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 GPATCH4Q5T3I0 446 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 NEK5Q6P3R8 708 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF600Q6ZNG1 722 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ADAT2Q7Z6V5 191 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF354CQ86Y25 554 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 COLGALT2Q8IYK4 626 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 C7orf61Q8IZ16 206 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 NXPE1Q8N323 547 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ENAHQ8N8S7 591 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 IQUBQ8NA54 791 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF540Q8NDQ6 660 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ADCY4Q8NFM4 1077 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 FBXO18Q8NFZ0 1043 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 GOT1L1Q8NHS2 421 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 IP6K1Q92551 441 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 USP7Q93009 1102 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ELMO3Q96BJ8 720 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 GMCL1Q96IK5 515 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 MAELQ96JY0 434 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 SMG9Q9H0W8 520 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 SMARCAD1Q9H4L7 1026 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ALG13Q9NP73 1137 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 DDX18Q9NVP1 670 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 CACNA2D2Q9NY47 1150 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 DDX25Q9UHL0 483 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 DACH1Q9UI36 760 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP11BQ9Y2G3 1177 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF711Q9Y462 761 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 TRAF6Q9Y4K3 522 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 KIF24Q5T7B8 1368 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 MAP3K19Q56UN5 1328 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 TAF1LQ8IZX4 1826 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TARSL2A2RTX5 802 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 RASSF10A6NK89 507 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 K7ENM7 598 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 CYP27B1O15528 508 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TIPRLO75663 272 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 MT-CO1P00395 513 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PYGMP11217 842 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 IDO1P14902 403 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 MCM3P25205 808 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 KRT20P35900 424 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 RAD52P43351 418 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 MAN2A2P49641 1150 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 BASP1P80723 227 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 NFIAQ12857 509 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 SMAD4Q13485 552 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 OASLQ15646 514 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 CFAP100Q494V2 611 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 SETMARQ53H47 684 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 HDXQ7Z353 690 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PHACTR4Q8IZ21 702 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 CCHCR1Q8TD31 782 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 BRF1Q92994 677 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PDLIM2Q96JY6 352 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 C16orf45Q96MC5 204 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 STK31Q9BXU1 1019 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 FBRSQ9HAH7 460 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 BLOC1S4Q9NUP1 217 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ATPIF1Q9UII2 106 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PAIP2BQ9ULR5 123 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 GOLGB1Q14789 3259 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 RTL1A6NKG5 1358 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 CICQ96RK0 1608 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TRAV6A0A075B6T7 132 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 KLRG2A4D1S0 409 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ANKRD34BA5PLL1 514 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 EIF3CLB5ME19 914 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM232C9JQI7 657 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ZBTB14O43829 449 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF862O60290 1169 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PRKD3O94806 890 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 GFPT2O94808 682 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 SNX4O95219 450 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 FESP07332 822 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 UBL4AP11441 157 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PTPRAP18433 802 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 FBLN1P23142 703 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 CDC25CP30307 473 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PMS2P54278 862 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PLTPP55058 493 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 SUMO1P63165 101 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 DHCR24Q15392 516 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PIK3R6Q5UE93 754 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 HEATR6Q6AI08 1181 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TATDN1Q6P1N9 297 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TRIM67Q6ZTA4 783 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 USP51Q70EK9 711 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PPP1R14CQ8TAE6 165 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 CCDC110Q8TBZ0 833 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 LPIN2Q92539 896 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms