RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 NIF3L1Q9GZT8 377 aa11.3□□□□□ -0.6
SYNE2-206ENST00000441438 TRPM5Q9NZQ8 1165 aa11.3□□□□□ -0.6
SYNE2-206ENST00000441438 L1RE1Q9UN81 338 aa11.3□□□□□ -0.6
SYNE2-206ENST00000441438 COL3A1P02461 1466 aaPredicted RBP11.3□□□□□ -0.6
SYNE2-206ENST00000441438 MAFKO60675 156 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 COL6A2P12110 1019 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 NPR3P17342 541 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 HOXA11P31270 313 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 CENPCQ03188 943 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 CCDC40Q4G0X9 1142 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 CEP78Q5JTW2 689 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 OR8H3Q8N146 312 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 PDCD7Q8N8D1 485 aaKnown RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 ATP6V0A1Q93050 837 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 PPP1R13BQ96KQ4 1090 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 NSMCE4AQ9NXX6 385 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 EMC3Q9P0I2 261 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 TRIM33Q9UPN9 1127 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 MRC1P22897 1456 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 LY75O60449 1722 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 FAM83GA6ND36 823 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 MAGEB3O15480 346 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 ZFYP08048 801 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 DHX34Q14147 1143 aaKnown RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 STAT4Q14765 748 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 SYDE2Q5VT97 1194 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 NKAIN4Q8IVV8 208 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 FAM20CQ8IXL6 584 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 SUCLG2Q96I99 432 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 TM9SF3Q9HD45 589 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 MAPRE3Q9UPY8 281 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 CFL2Q9Y281 166 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 MROH5Q6ZUA9 1318 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 PAPLNO95428 1278 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 PTGS2P35354 604 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 CPA2P48052 419 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 KRT32Q14532 448 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 ZNF674Q2M3X9 581 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 TWF2Q6IBS0 349 aaKnown RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 ZYG11AQ6WRX3 759 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 PDZD4Q76G19 769 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 SMC1BQ8NDV3 1235 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 TUBGCP3Q96CW5 907 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 ZC3H10Q96K80 434 aaKnown RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 OLA1Q9NTK5 396 aaKnown RBP11.29□□□□□ -0.6
SYNE2-206ENST00000441438 ZSWIM5Q9P217 1185 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 TRIM35Q9UPQ4 493 aa11.29□□□□□ -0.6
SYNE2-206ENST00000441438 A0A0B4J269 797 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 IRAK2O43187 625 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 NCK2O43639 380 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 KERAO60938 352 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 SOX9P48436 509 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 PHEXP78562 749 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 DSG2Q14126 1118 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 STK38Q15208 465 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 ERCC6LQ2NKX8 1250 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 RAB11FIP2Q7L804 512 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 NME9Q86XW9 330 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 KRT73Q86Y46 540 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 DEPTORQ8TB45 409 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 DIS3LQ8TF46 1054 aaKnown RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 SEPT1Q8WYJ6 367 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 PHACTR3Q96KR7 559 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 FAM129BQ96TA1 746 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 TSEN34Q9BSV6 310 aaKnown RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 WDR6Q9NNW5 1121 aaKnown RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 ATP6V1DQ9Y5K8 247 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 SEC24DO94855 1032 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 CYP3A4P08684 503 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 SNRPA1P09661 255 aaKnown RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 CYP2C19P33261 490 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 LIFRP42702 1097 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 MAGEA9P43362 315 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 SCNN1GP51170 649 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 ALDH3A2P51648 485 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 PMS2P54278 862 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 RPP38P78345 283 aaKnown RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 ZNF252P-AS1Q0IIN9 211 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 MAP7Q14244 749 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 DRICH1Q6PGQ1 229 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 OLFM4Q6UX06 510 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 GOLM1Q8NBJ4 401 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 TPCN2Q8NHX9 752 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 SLC7A3Q8WY07 619 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 DMRTB1Q96MA1 342 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 DACH2Q96NX9 599 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 CCT7Q99832 543 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 STK31Q9BXU1 1019 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 OXCT2Q9BYC2 517 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 ADNPQ9H2P0 1102 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 PDE7BQ9NP56 450 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 IARS2Q9NSE4 1012 aaKnown RBP11.28□□□□□ -0.6
SYNE2-206ENST00000441438 C1orf112Q9NSG2 853 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 MOSPD1Q9UJG1 213 aa11.28□□□□□ -0.6
SYNE2-206ENST00000441438 LRRC14BA6NHZ5 514 aa11.27□□□□□ -0.6
SYNE2-206ENST00000441438 AP3D1O14617 1153 aa11.27□□□□□ -0.6
SYNE2-206ENST00000441438 CAP1Q01518 475 aa11.27□□□□□ -0.6
SYNE2-206ENST00000441438 MBTPS1Q14703 1052 aa11.27□□□□□ -0.6
SYNE2-206ENST00000441438 FBXO48Q5FWF7 155 aa11.27□□□□□ -0.6
SYNE2-206ENST00000441438 FCHSD1Q86WN1 690 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms