RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 PPP4R3CPQ6ZMV5 832 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 FASTKD5Q7L8L6 764 aaKnown RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 FRMD5Q7Z6J6 570 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 ZNF444Q8N0Y2 327 aaPredicted RBP9.18□□□□□ -0.94
HPS4-206ENST00000439453 RFFLQ8WZ73 363 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 PIGSQ96S52 555 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 NYAP2Q9P242 653 aa9.18□□□□□ -0.94
HPS4-206ENST00000439453 NT5C2P49902 561 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 ZYXQ15942 572 aaKnown RBP9.17□□□□□ -0.94
HPS4-206ENST00000439453 NBPF20Q3BBV1 942 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 USP17L2Q6R6M4 530 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 LNX1Q8TBB1 728 aaPredicted RBP9.17□□□□□ -0.94
HPS4-206ENST00000439453 C18orf8Q96DM3 657 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 TRIM7Q9C029 511 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 ASCC2Q9H1I8 757 aaPredicted RBP9.17□□□□□ -0.94
HPS4-206ENST00000439453 TXNRD2Q9NNW7 524 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.17□□□□□ -0.94
HPS4-206ENST00000439453 PARP2Q9UGN5 583 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 ESYT2A0FGR8 921 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 NEFHP12036 1026 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 CCNB1P14635 433 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 GBP1P32455 592 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 EPHA7Q15375 998 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 TAF1CQ15572 869 aaPredicted RBP9.17□□□□□ -0.94
HPS4-206ENST00000439453 GJB7Q6PEY0 223 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 ARHGAP39Q9C0H5 1083 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 SIX2Q9NPC8 291 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 PRKAG3Q9UGI9 489 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 TMEM120BA0PK00 339 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 E9PMD0 336 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 HIP1RO75146 1068 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 PHF2O75151 1096 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 GFPT2O94808 682 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 FERP16591 822 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 TRIM68Q6AZZ1 485 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 CATSPERGQ6ZRH7 1159 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 MAEAQ7L5Y9 396 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 OTUD6AQ7L8S5 288 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 SLC30A5Q8TAD4 765 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 RMDN2Q96LZ7 410 aa9.17□□□□□ -0.94
HPS4-206ENST00000439453 RAB3IPQ96QF0 476 aaPredicted RBP9.17□□□□□ -0.94
HPS4-206ENST00000439453 IGSF9BQ9UPX0 1349 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 DPPA5A6NC42 116 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 TMEM253P0C7T8 217 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 XRCC5P13010 732 aaKnown RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 RARGP13631 454 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 GNAZP19086 355 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 CLUL1Q15846 466 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 DCAF17Q5H9S7 520 aaPredicted RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 SLC30A9Q6PML9 568 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 GPBP1Q86WP2 473 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ROPN1BQ9BZX4 212 aaPredicted RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 ROPN1Q9HAT0 212 aaPredicted RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 CPSF2Q9P2I0 782 aaKnown RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 NKX1-2Q9UD57 310 aaPredicted RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 LRRC42Q9Y546 428 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 DNAH12Q6ZR08 3092 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 UPP2O95045 317 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 PLA2G4BP0C869 781 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ABCB4P21439 1286 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 CHRNA3P32297 505 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 SKIV2L2P42285 1042 aaKnown RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 VSTM1Q6UX27 236 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 LBX2Q6XYB7 198 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 CKAP2Q8WWK9 683 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 CTNNBL1Q8WYA6 563 aaPredicted RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 ALG3Q92685 438 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ARHGEF2Q92974 986 aaKnown RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 GJA10Q969M2 543 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ZHX3Q9H4I2 956 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 MLXIPLQ9NP71 852 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 PODXLO00592 558 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 HGSO14964 777 aaPredicted RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 CREB1P16220 341 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 RAB27AP51159 221 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 LONRF1Q17RB8 773 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 TCERG1LQ5VWI1 586 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ANO7Q6IWH7 933 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 AADACL2Q6P093 401 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 GLYCTKQ8IVS8 523 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ANKRD42Q8N9B4 389 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 GMCL1P1Q8NEA9 526 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 OLIG1Q8TAK6 271 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 P2RX7Q99572 595 aaKnown RBP9.16□□□□□ -0.94
HPS4-206ENST00000439453 ETNK1Q9HBU6 452 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 TMOD4Q9NZQ9 345 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 CPA4Q9UI42 421 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 SYNPO2Q9UMS6 1093 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 ADAMTS5Q9UNA0 930 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 KIAA1024Q9UPX6 916 aa9.16□□□□□ -0.94
HPS4-206ENST00000439453 SPDYE16A6NNV3 312 aaPredicted RBP9.15□□□□□ -0.94
HPS4-206ENST00000439453 STAT1P42224 750 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 ADCY7P51828 1080 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 RNF43Q68DV7 783 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 PRELID2Q8N945 189 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 REPS2Q8NFH8 660 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 GDAP1Q8TB36 358 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 FBF1Q8TES7 1133 aa9.15□□□□□ -0.94
HPS4-206ENST00000439453 UTP4Q969X6 686 aaKnown RBP9.15□□□□□ -0.94
HPS4-206ENST00000439453 RUNDC3BQ96NL0 473 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms