RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CARD6Q9BX69 1037 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 BIRC3Q13489 604 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 ZNF568Q3ZCX4 644 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 MPZL3Q6UWV2 235 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 GLYCTKQ8IVS8 523 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 THNSL1Q8IYQ7 743 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 TRPV1Q8NER1 839 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 LNX1Q8TBB1 728 aaPredicted RBP22.8■■□□□ 1.24
PTPRF-207ENST00000436724 NLRP7Q8WX94 980 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 FAM212AQ96EL1 285 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 NFKBIZQ9BYH8 718 aa22.8■■□□□ 1.24
PTPRF-207ENST00000436724 OGTO15294 1046 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 BUB1O43683 1085 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 TADA3O75528 432 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 SMIM10L2AP0DMW4 78 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 SMIM10L2BP0DMW5 78 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 LACTBP83111 547 aaPredicted RBP22.79■■□□□ 1.24
PTPRF-207ENST00000436724 DMTNQ08495 405 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 TMEM62Q0P6H9 643 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 HIC1Q14526 733 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 ALKBH5Q6P6C2 394 aaKnown RBP22.79■■□□□ 1.24
PTPRF-207ENST00000436724 NT5C1BQ96P26 610 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 ACP6Q9NPH0 428 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 HDAC6Q9UBN7 1215 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 DAAM1Q9Y4D1 1078 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 VNN1O95497 513 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 AMHR2Q16671 573 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 NFRKBQ6P4R8 1299 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 BRSK2Q8IWQ3 736 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 SCLT1Q96NL6 688 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 SYT11Q9BT88 431 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 FAM49AQ9H0Q0 323 aaPredicted RBP22.79■■□□□ 1.24
PTPRF-207ENST00000436724 PRDM4Q9UKN5 801 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 MYH10P35580 1976 aa22.79■■□□□ 1.24
PTPRF-207ENST00000436724 HLA-DRAP01903 254 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 ATP1A1P05023 1023 aaKnown RBP22.78■■□□□ 1.24
PTPRF-207ENST00000436724 MYL3P08590 195 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 FLT3LGP49771 235 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 FCGRTP55899 365 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 KIF22Q14807 665 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 SPOPLQ6IQ16 392 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 TMEM192Q8IY95 271 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 SLC20A1Q8WUM9 679 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 TRIB2Q92519 343 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 DHX38Q92620 1227 aaKnown RBP22.78■■□□□ 1.24
PTPRF-207ENST00000436724 CPB2Q96IY4 423 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 CGRRF1Q99675 332 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 CPSF3Q9UKF6 684 aaKnown RBP22.78■■□□□ 1.24
PTPRF-207ENST00000436724 GINS2Q9Y248 185 aa22.78■■□□□ 1.24
PTPRF-207ENST00000436724 TOMM70O94826 608 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 POU5F1BQ06416 359 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 BMS1Q14692 1282 aaKnown RBP22.77■■□□□ 1.24
PTPRF-207ENST00000436724 MFSD10Q14728 455 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 NAB2Q15742 525 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 VPS36Q86VN1 386 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 PALB2Q86YC2 1186 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 MNS1Q8NEH6 495 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 U2AF1L4Q8WU68 220 aaKnown RBP22.77■■□□□ 1.24
PTPRF-207ENST00000436724 UBXN4Q92575 508 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 AP5M1Q9H0R1 490 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 CDT1Q9H211 546 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 PRMT7Q9NVM4 692 aaPredicted RBP22.77■■□□□ 1.24
PTPRF-207ENST00000436724 NENFQ9UMX5 172 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 CEP350Q5VT06 3117 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 PIK3CAP42336 1068 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 CPT1AP50416 773 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 MFAP3P55082 362 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 KIZQ2M2Z5 673 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 SLC30A5Q8TAD4 765 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 LUC7LQ9NQ29 371 aaKnown RBP22.77■■□□□ 1.24
PTPRF-207ENST00000436724 TNFSF13BQ9Y275 285 aa22.77■■□□□ 1.24
PTPRF-207ENST00000436724 MYADML2A6NDP7 307 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 TMCO5BA8MYB1 307 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 GPR25O00155 361 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 FGFR4P22455 802 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 CLCN6P51797 869 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 NOGQ13253 232 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 IFNLR1Q8IU57 520 aaPredicted RBP22.76■■□□□ 1.23
PTPRF-207ENST00000436724 FAM71AQ8IYT1 594 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 SHC3Q92529 594 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 EFCAB8A8MWE9 144 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 CYP26A1O43174 497 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 SGPL1O95470 568 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 CCDC172P0C7W6 258 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 PRKCZQ05513 592 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 TRIM32Q13049 653 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 SEPT11Q9NVA2 429 aaKnown RBP22.76■■□□□ 1.23
PTPRF-207ENST00000436724 NRCAMQ92823 1304 aa22.76■■□□□ 1.23
PTPRF-207ENST00000436724 RRN3P2A6NIE6 340 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 ZEB2O60315 1214 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 AKR1A1P14550 325 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 ARF4P18085 180 aaPredicted RBP22.75■■□□□ 1.23
PTPRF-207ENST00000436724 NAP1L1P55209 391 aaKnown RBP22.75■■□□□ 1.23
PTPRF-207ENST00000436724 ZNF200P98182 395 aaPredicted RBP22.75■■□□□ 1.23
PTPRF-207ENST00000436724 AMPD2Q01433 879 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 FSCN1Q16658 493 aaKnown RBP22.75■■□□□ 1.23
PTPRF-207ENST00000436724 FAM187BQ17R55 369 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 RUFY4Q6ZNE9 571 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 SLC47A2Q86VL8 602 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 CAPNS2Q96L46 248 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms