RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 LDHDQ86WU2 507 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 TBC1D16Q8TBP0 767 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 ARHGAP45Q92619 1136 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 CHMP4CQ96CF2 233 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 CNNM1Q9NRU3 951 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 CCM2LQ9NUG4 571 aaPredicted RBP7.7□□□□□ -1.18
USP40-202ENST00000409945 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.7□□□□□ -1.18
USP40-202ENST00000409945 TSPAN6O43657 245 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 CSF1RP07333 972 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 ATF2P15336 505 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 LSP1P33241 339 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 EPHX2P34913 555 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 GJA4P35212 333 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 EPHB1P54762 984 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 NR1I3Q14994 352 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 KCNMB1Q16558 191 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 CT83Q5H943 113 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 PGM2L1Q6PCE3 622 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 LMBR1LQ6UX01 489 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 LDHAL6AQ6ZMR3 332 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 CXorf67Q86X51 503 aaPredicted RBP7.7□□□□□ -1.18
USP40-202ENST00000409945 LYSMD2Q8IV50 215 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 ALG3Q92685 438 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 MYL10Q9BUA6 226 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 LRRC37AA6NMS7 1700 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 ZNF541Q9H0D2 1346 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 SNED1Q8TER0 1413 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 GOLGA8AA7E2F4 631 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 GOLGA8BA8MQT2 603 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 GOLGA6L22H0YM25 854 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 ECE2O60344 883 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 CYP17A1P05093 508 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 UBTFL1P0CB47 393 aaPredicted RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 RPS12P25398 132 aaKnown RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 RARSP54136 660 aaKnown RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 ETV3LQ6ZN32 361 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 PRR23BQ6ZRT6 265 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 USP50Q70EL3 339 aaPredicted RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 ZBTB46Q86UZ6 589 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 TRIM48Q8IWZ4 208 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 FAM126BQ8IXS8 530 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 FRAT1Q92837 279 aaPredicted RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 FAXDC2Q96IV6 333 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 DIRC2Q96SL1 478 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 CDH19Q9H159 772 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 SLC6A17Q9H1V8 727 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 TAF1DQ9H5J8 278 aaPredicted RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 IP6K2Q9UHH9 426 aa7.69□□□□□ -1.18
USP40-202ENST00000409945 NOB1Q9ULX3 412 aaKnown RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 LUC7L2Q9Y383 392 aaKnown RBP7.69□□□□□ -1.18
USP40-202ENST00000409945 RAD17O75943 681 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 ABLIM3O94929 683 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 PRLP01236 227 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 LPLP06858 475 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 GNAI3P08754 354 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 OSMP13725 252 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 EPHB3P54753 998 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 MANFP55145 182 aaKnown RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 HTRA3P83110 453 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 SRSF2Q01130 221 aaKnown RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 CXCL9Q07325 125 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 EPHA7Q15375 998 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 PITRM1Q5JRX3 1037 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 GPR158Q5T848 1215 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 TPH2Q8IWU9 490 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 FTSJ3Q8IY81 847 aaKnown RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 HIPK4Q8NE63 616 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 TOE1Q96GM8 510 aaKnown RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 DBNDD1Q9H9R9 158 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 ADARB2Q9NS39 739 aaKnown RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 POLLQ9UGP5 575 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 TMPRSS11EQ9UL52 423 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 TAF1P21675 1872 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 MED23Q9ULK4 1368 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 APOL3O95236 402 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 CELA3BP08861 270 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 MMP14P50281 582 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 FOXO4P98177 505 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 PFKPQ01813 784 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 PPP2R5AQ15172 486 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 CD300LDQ6UXZ3 194 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 ZNF804AQ7Z570 1209 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 IRF2BP1Q8IU81 584 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 DPF2Q92785 391 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 EAF2Q96CJ1 260 aaPredicted RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 ZNF552Q9H707 407 aaPredicted RBP7.68□□□□□ -1.18
USP40-202ENST00000409945 FAN1Q9Y2M0 1017 aa7.68□□□□□ -1.18
USP40-202ENST00000409945 ZNF804BA4D1E1 1349 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 UTYO14607 1347 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 MYO3BQ8WXR4 1341 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 PRSS38A1L453 326 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 ZRANB2O95218 330 aaKnown RBP eCLIP7.67□□□□□ -1.18
USP40-202ENST00000409945 NBPF7P0C2Y1 421 aaPredicted RBP7.67□□□□□ -1.18
USP40-202ENST00000409945 ITGB5P18084 799 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 FNTBP49356 437 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 GMPSP49915 693 aaPredicted RBP7.67□□□□□ -1.18
USP40-202ENST00000409945 CHRNDQ07001 517 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 TRIM25Q14258 630 aaKnown RBP7.67□□□□□ -1.18
USP40-202ENST00000409945 SLC9A5Q14940 896 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 ZKSCAN2Q63HK3 967 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms