RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 BRWD3Q6RI45 1802 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 CCDC188H7C350 402 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 RTN2O75298 545 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 RGS20O76081 388 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 NSFP46459 744 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 BRDTQ58F21 947 aaPredicted RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 GJC2Q5T442 439 aaPredicted RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 ARHGAP27Q6ZUM4 889 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 ATP6V0A1Q93050 837 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 ZSWIM1Q9BR11 485 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 RAB17Q9H0T7 212 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 NFKBIEO00221 500 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 NPM3O75607 178 aaKnown RBP14.33□□□□□ -0.11
VPS54-203ENST00000409558 HLA-DRAP01903 254 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 ADCY8P40145 1251 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 MDH1P40925 334 aaKnown RBP14.33□□□□□ -0.11
VPS54-203ENST00000409558 TNFSF9P41273 254 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 PMS2P54278 862 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 KRT76Q01546 638 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 CUL1Q13616 776 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 LY6KQ17RY6 165 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 FAM83AQ86UY5 434 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 XPNPEP1Q9NQW7 623 aa14.33□□□□□ -0.11
VPS54-203ENST00000409558 GOLGA6L7A0A1B0GV03 622 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 RGS16O15492 202 aaPredicted RBP14.33□□□□□ -0.12
VPS54-203ENST00000409558 BAG6P46379 1132 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 CALCOCO2Q13137 446 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 QPCTQ16769 361 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 PACS2Q86VP3 889 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 NLRP14Q86W24 1093 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 RHOT2Q8IXI1 618 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 OR5B17Q8NGF7 314 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 C9orf72Q96LT7 481 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 KIAA1683Q9H0B3 1180 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 CYP26B1Q9NR63 512 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 AGO2Q9UKV8 859 aaKnown RBP14.33□□□□□ -0.12
VPS54-203ENST00000409558 PTPRJQ12913 1337 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 TTC31Q49AM3 519 aaPredicted RBP14.33□□□□□ -0.12
VPS54-203ENST00000409558 TMEM63BQ5T3F8 832 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 GPD1LQ8N335 351 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 ZNF516Q92618 1163 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 OTUD5Q96G74 571 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 SH3GL2Q99962 352 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 ZNF408Q9H9D4 720 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 RBAKQ9NYW8 714 aaPredicted RBP14.33□□□□□ -0.12
VPS54-203ENST00000409558 RASAL2Q9UJF2 1139 aa14.33□□□□□ -0.12
VPS54-203ENST00000409558 CREB1P16220 341 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 PTPRAP18433 802 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 GTF2BQ00403 316 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 ZNF572Q7Z3I7 529 aaPredicted RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 ASAP3Q8TDY4 903 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 ZNF473Q8WTR7 871 aaKnown RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 TMBIM4Q9HC24 238 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 SAE1Q9UBE0 346 aaPredicted RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 TMEM59LQ9UK28 342 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 MTUS1Q9ULD2 1270 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 PSAPP07602 524 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 HSPA9P38646 679 aaKnown RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 SMTNL2Q2TAL5 461 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 CYP4A22Q5TCH4 519 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 OLIG1Q8TAK6 271 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 LPAR1Q92633 364 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 KIFAP3Q92845 792 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 TCF4P15884 667 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 CYP24A1Q07973 514 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 KIF22Q14807 665 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 EMC2Q15006 297 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 VSIG10LQ86VR7 867 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 C4orf19Q8IY42 314 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 SLC7A3Q8WY07 619 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 PSMD1Q99460 953 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 HERPUD2Q9BSE4 406 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 ATP6V0A4Q9HBG4 840 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 R3HDM2Q9Y2K5 976 aaKnown RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 INO80B-WBP1J3KQ70 363 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 MAP3K6O95382 1288 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 JAK3P52333 1124 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 HIRAP54198 1017 aaPredicted RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 KRT17Q04695 432 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 KYNUQ16719 465 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 TREML2Q5T2D2 321 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 PLCD3Q8N3E9 789 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 CEP120Q8N960 986 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 HELQQ8TDG4 1101 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 LRRN4Q8WUT4 740 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 CABS1Q96KC9 395 aa14.32□□□□□ -0.12
VPS54-203ENST00000409558 INO80BQ9C086 356 aaPredicted RBP14.32□□□□□ -0.12
VPS54-203ENST00000409558 RWDD2BP57060 319 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 SLFN11Q7Z7L1 901 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 ADAM22Q9P0K1 906 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 ZSCAN5DPP0CG00 497 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 RALAP11233 206 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 PTENP60484 403 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 SMAD1Q15797 465 aaKnown RBP14.31□□□□□ -0.12
VPS54-203ENST00000409558 PTGISQ16647 500 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 B3GNT9Q6UX72 402 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 NEK9Q8TD19 979 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 COPS5Q92905 334 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 SCLT1Q96NL6 688 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 CARD9Q9H257 536 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms