RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SLC18A3Q16572 532 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 TAS1R2Q8TE23 839 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 HAUS1Q96CS2 278 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 DNAJC19Q96DA6 116 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 DUSP9Q99956 384 aaKnown RBP9.71□□□□□ -0.86
LIG4-202ENST00000405925 STRIP2Q9ULQ0 834 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 MARF1Q9Y4F3 1742 aaKnown RBP9.71□□□□□ -0.86
LIG4-202ENST00000405925 SSU72P8A0A1W2PR75 194 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 P4HA2O15460 535 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 CD4P01730 458 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 BMP6P22004 513 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 ECM1Q16610 540 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 FAM102AQ5T9C2 384 aaPredicted RBP9.71□□□□□ -0.86
LIG4-202ENST00000405925 TRIM72Q6ZMU5 477 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 TRIM59Q8IWR1 403 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 APPL2Q8NEU8 664 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 HPDLQ96IR7 371 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 FAM49BQ9NUQ9 324 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 RBPJLQ9UBG7 517 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 NFASCO94856 1347 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 PIK3R2O00459 728 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 SRGAP2O75044 1071 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 GHRP10912 638 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 KCNJ6P48051 423 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 RWDD2BP57060 319 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 ZRSR2Q15696 482 aaKnown RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIG4-202ENST00000405925 KCTD6Q8NC69 237 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 CCNYQ8ND76 341 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 GRK7Q8WTQ7 553 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 ZBTB45Q96K62 511 aaPredicted RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 STMN4Q9H169 189 aaPredicted RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 SLITRK6Q9H5Y7 841 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 PCSK1NQ9UHG2 260 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 PACSIN2Q9UNF0 486 aaPredicted RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 TRAF3IP3Q9Y228 551 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 DCDC2CA8MYV0 355 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 RRP9O43818 475 aaKnown RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 KLRC4O43908 158 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 STAG3L1P0CL83 205 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 CXCL8P10145 99 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 CLK2P49760 499 aaKnown RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 PPARDQ03181 441 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 DCAF4L1Q3SXM0 396 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 E4F1Q66K89 784 aaPredicted RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 TAF2Q6P1X5 1199 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 SV2AQ7L0J3 742 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 CCDC63Q8NA47 563 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 RFFLQ8WZ73 363 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 AP1M1Q9BXS5 423 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 KCNK9Q9NPC2 374 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 GPR182O15218 404 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 AP5Z1O43299 807 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 TRAPPC3O43617 180 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 TADA2AO75478 443 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 B3GAT3O94766 335 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 ZRANB2O95218 330 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIG4-202ENST00000405925 PRKAR2AP13861 404 aaKnown RBP9.7□□□□□ -0.86
LIG4-202ENST00000405925 PON1P27169 355 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 SDC4P31431 198 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 OR1G1P47890 313 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 RGS7P49802 495 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 C2orf54Q08AI8 447 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 CAPN12Q6ZSI9 719 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 ANO5Q75V66 913 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 HSPH1Q92598 858 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 PBKQ96KB5 322 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 SLC38A7Q9NVC3 462 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 PCDHB2Q9Y5E7 798 aa9.7□□□□□ -0.86
LIG4-202ENST00000405925 DUOX1Q9NRD9 1551 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 SGK1O00141 431 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 NCK2O43639 380 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 PQBP1O60828 265 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 FARP2O94887 1054 aaPredicted RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 FGGP02679 453 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 MAPTP10636 758 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 GALCP54803 685 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 MRPS25P82663 173 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 CEP128Q6ZU80 1094 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 RNF10Q8N5U6 811 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 ASAP3Q8TDY4 903 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 CPA5Q8WXQ8 436 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 VPS18Q9P253 973 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 UBQLN1Q9UMX0 589 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 PASKQ96RG2 1323 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 IGLV3-22A0A075B6J6 115 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 SOWAHBA6NEL2 793 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 HEXIM1O94992 359 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 ATF2P15336 505 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 ELNP15502 786 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 HPDP32754 393 aaPredicted RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 CYP24A1Q07973 514 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 ITKQ08881 620 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 ZNF211Q13398 564 aaPredicted RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 PAN2Q504Q3 1202 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 UHMK1Q8TAS1 419 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 HEMGNQ9BXL5 484 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 PLCB1Q9NQ66 1216 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 PLAGL2Q9UPG8 496 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 DAAM1Q9Y4D1 1078 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms