RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ECHDC2Q86YB7 292 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 LINC01599Q8WXQ3 324 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 IL23AQ9NPF7 189 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 PCDH10Q9P2E7 1040 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 LRRC10BA6NIK2 292 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 LACTBL1A8MY62 500 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 C9IYK1 514 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 CBFA2T2O43439 604 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 STX10O60499 249 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 TPM3P06753 285 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 ACRP10323 421 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 DLG4P78352 724 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 FPGSQ05932 587 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 KCNH2Q12809 1159 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 TCTN1Q2MV58 587 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 SLC10A6Q3KNW5 377 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 VWA3BQ502W6 1294 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 MRPL10Q7Z7H8 261 aaKnown RBP19.6■□□□□ 0.73
SDC1-203ENST00000403076 PLEKHO2Q8TD55 490 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 LPPQ93052 612 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 SLC35C1Q96A29 364 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 POP1Q99575 1024 aaKnown RBP19.6■□□□□ 0.73
SDC1-203ENST00000403076 NDST4Q9H3R1 872 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 KLK14Q9P0G3 267 aa19.6■□□□□ 0.73
SDC1-203ENST00000403076 TET1Q8NFU7 2136 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 LRRIQ3A6PVS8 624 aaPredicted RBP19.59■□□□□ 0.73
SDC1-203ENST00000403076 AFPP02771 609 aaKnown RBP19.59■□□□□ 0.73
SDC1-203ENST00000403076 PFKMP08237 780 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 ACTN1P12814 892 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 LMBRD2Q68DH5 695 aaPredicted RBP19.59■□□□□ 0.73
SDC1-203ENST00000403076 CD302Q8IX05 232 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 NAP1L5Q96NT1 182 aaPredicted RBP19.59■□□□□ 0.73
SDC1-203ENST00000403076 CGRRF1Q99675 332 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 LBHD1Q9BQE6 289 aaPredicted RBP19.59■□□□□ 0.73
SDC1-203ENST00000403076 ASB7Q9H672 318 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 PLEKHA5Q9HAU0 1116 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 LRFN2Q9ULH4 789 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 NR2E3Q9Y5X4 410 aa19.59■□□□□ 0.73
SDC1-203ENST00000403076 TTC26A0AVF1 554 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 EOMESO95936 686 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 WNT7BP56706 349 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 FAM189BP81408 668 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 UBXN1Q04323 297 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 FKBP15Q5T1M5 1219 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 SARM1Q6SZW1 724 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 APTXQ7Z2E3 356 aaKnown RBP19.58■□□□□ 0.73
SDC1-203ENST00000403076 SNX27Q96L92 541 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 XPO4Q9C0E2 1151 aaKnown RBP19.58■□□□□ 0.73
SDC1-203ENST00000403076 GIT1Q9Y2X7 761 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 PCDHB7Q9Y5E2 793 aa19.58■□□□□ 0.73
SDC1-203ENST00000403076 A0A1B0GTH6 734 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 AP5Z1O43299 807 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 GCLMP48507 274 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 TFAMQ00059 246 aaKnown RBP19.57■□□□□ 0.72
SDC1-203ENST00000403076 ENPEPQ07075 957 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 MIIPQ5JXC2 388 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 AGMOQ6ZNB7 445 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 RPS6KC1Q96S38 1066 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 RSAD1Q9HA92 442 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 UBN1Q9NPG3 1134 aa19.57■□□□□ 0.72
SDC1-203ENST00000403076 RNF216Q9NWF9 866 aaPredicted RBP19.57■□□□□ 0.72
SDC1-203ENST00000403076 ABHD14A-ACY1A0A1B0GW23 586 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 MEIS3P2A8K0S8 358 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 LGALS16A8MUM7 142 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 N4BP1O75113 896 aaKnown RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 TMEM191BP0C7N4 346 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 TMEM132DQ14C87 1099 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 C1orf220Q5T0J3 134 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 JADE1Q6IE81 842 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 WDR49Q8IV35 697 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 CACTINQ8WUQ7 758 aaKnown RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 ANP32BQ92688 251 aaKnown RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 VWCEQ96DN2 955 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 KIF12Q96FN5 646 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 ANKRD36BP1Q96IX9 119 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 GAD1Q99259 594 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 RTN4Q9NQC3 1192 aaKnown RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 TMEM161AQ9NX61 479 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 MEFVO15553 781 aaPredicted RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 EFCAB14O75071 495 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 PHACTR2O75167 634 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 TNNC2P02585 160 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 FGBP02675 491 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 ATF7P17544 494 aaPredicted RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 GTF2H1P32780 548 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 MLH1P40692 756 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 FMO5P49326 533 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 AP3M2P53677 418 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 PPP3CAQ08209 521 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 CETN1Q12798 172 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 BIRC3Q13489 604 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 DUOXA2Q1HG44 320 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 ZNF598Q86UK7 904 aaKnown RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 ELAC1Q9H777 363 aaKnown RBP19.56■□□□□ 0.72
SDC1-203ENST00000403076 RNF19AQ9NV58 838 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 INTS13Q9NVM9 706 aa19.56■□□□□ 0.72
SDC1-203ENST00000403076 TEX33O43247 280 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 NFICP08651 508 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 MXI1P50539 228 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms