RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ZNF212Q9UDV6 495 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 ZNF652Q9Y2D9 606 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 TNRQ92752 1358 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 FAM205AQ6ZU69 1335 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 POTEFA5A3E0 1075 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 RSPH10B2B2RC85 870 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 WFS1O76024 890 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 RSPH10BP0C881 870 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 POTEIP0CG38 1075 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 EEF1DP29692 281 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 HNRNPH3P31942 346 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 ABL2P42684 1182 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 GCLMP48507 274 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 GSTO1P78417 241 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 TMEM259Q4ZIN3 620 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 NAALADL2Q58DX5 795 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 POTEGQ6S5H5 508 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 POTEEQ6S8J3 1075 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 MIGA2Q7L4E1 593 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 NUDCD3Q8IVD9 361 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 POP1Q99575 1024 aaKnown RBP9.86□□□□□ -0.83
COL28A1-201ENST00000399429 FERMT1Q9BQL6 677 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 LRMDAQ9H2I8 198 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 ZWILCHQ9H900 591 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 OLFML3Q9NRN5 406 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 FLT1P17948 1338 aa9.86□□□□□ -0.83
COL28A1-201ENST00000399429 MYH10P35580 1976 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 KLRC4O43908 158 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 SEC24DO94855 1032 aaPredicted RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 YY1P25490 414 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 LTKP29376 864 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 IL17AQ16552 155 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 GLIS3Q8NEA6 775 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 SLC30A5Q8TAD4 765 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PYDC1Q8WXC3 89 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 SPOCK2Q92563 424 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 CASP10Q92851 521 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 CFAP36Q96G28 342 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 AGPAT1Q99943 283 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 TTYH3Q9C0H2 523 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 CAAP1Q9H8G2 361 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 ZBBXA8MT70 800 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 K7ENM7 598 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 STRNO43815 780 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 GMNNO75496 209 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 KRT1P04264 644 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 RGS2P41220 211 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 SKIV2L2P42285 1042 aaKnown RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 ARSEP51690 589 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 DMPKQ09013 629 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 RASA2Q15283 850 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 SLC5A9Q2M3M2 681 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 CNPY1Q3B7I2 92 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 SYCP2LQ5T4T6 812 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 C1orf228Q6PIY5 440 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PPM1NQ8N819 430 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PDZD8Q8NEN9 1154 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 FAM81BQ96LP2 452 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 IMPG2Q9BZV3 1241 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 ETNK2Q9NVF9 386 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 LMCD1Q9NZU5 365 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 EPS15L1Q9UBC2 864 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 DTNAQ9Y4J8 743 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PFASO15067 1338 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 NBPF26B4DH59 902 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 CES2O00748 559 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PEX11AO75192 247 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 S100BP04271 92 aaPredicted RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 VIL1P09327 827 aaKnown RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 VEGFAP15692 232 aaPredicted RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PON1P27169 355 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 ARHGAP4P98171 946 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 RRP1BQ14684 758 aaKnown RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 DUPD1Q68J44 220 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 FRMD5Q7Z6J6 570 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 NBPF15Q8N660 670 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 TMEM120AQ9BXJ8 343 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 NDEL1Q9GZM8 345 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 MTFR1LQ9H019 292 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 KLHL11Q9NVR0 708 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 NR2E1Q9Y466 385 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 A6NJR5 290 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 IPO5O00410 1097 aaKnown RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 HARSP12081 509 aaKnown RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 MFAP3P55082 362 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PDE1BQ01064 536 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 B3GNT6Q6ZMB0 384 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 GCNAQ96QF7 691 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 ZSWIM1Q9BR11 485 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 DCUN1D5Q9BTE7 237 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 KLHL4Q9C0H6 718 aa9.85□□□□□ -0.83
COL28A1-201ENST00000399429 PSMC3IPQ9P2W1 217 aaPredicted RBP9.85□□□□□ -0.83
COL28A1-201ENST00000399429 AGLP35573 1532 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 DDX3XO00571 662 aaKnown RBP eCLIP9.84□□□□□ -0.83
COL28A1-201ENST00000399429 SLC16A2P36021 539 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 STAT3P40763 770 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ART3Q13508 389 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 ATP1A4Q13733 1029 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 DDB1Q16531 1140 aa9.84□□□□□ -0.83
COL28A1-201ENST00000399429 RBM44Q6ZP01 1051 aaKnown RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms