RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 NAGPAQ9UK23 515 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 LRP5O75197 1615 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 SPDYE16A6NNV3 312 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 RSPH10B2B2RC85 870 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 RSPH10BP0C881 870 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 HSPA9P38646 679 aaKnown RBP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 PSMC1P62191 440 aaKnown RBP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 NOP14P78316 857 aaKnown RBP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 ART3Q13508 389 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 SPDYE2Q495Y8 402 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 OR6B3Q8NGW1 331 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 RBM15Q96T37 977 aaKnown RBP eCLIP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 FAM49AQ9H0Q0 323 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 TMEM120BA0PK00 339 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 M0QZ92 97 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 FAM107AO95990 144 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 GLI1P08151 1106 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 GYS1P13807 737 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 NT5C2P49902 561 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 NPY5RQ15761 445 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 KLHDC7AQ5VTJ3 777 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 ATG16L1Q676U5 607 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 PPP1R18Q6NYC8 613 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 POTEAQ6S8J7 498 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 RHPN2Q8IUC4 686 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 MCPH1Q8NEM0 835 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 DNAJC7Q99615 494 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 ERP44Q9BS26 406 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 TMEM117Q9H0C3 514 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 SEMA6BQ9H3T3 888 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 TRABDQ9H4I3 376 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 JMJD4Q9H9V9 463 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 MARCOQ9UEW3 520 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-204ENST00000397545 POLLQ9UGP5 575 aa11.42□□□□□ -0.58
CCDC40-204ENST00000397545 TTC36A6NLP5 189 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 NPR1P16066 1061 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 CASP4P49662 377 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 SEMA3FQ13275 785 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ZNF699Q32M78 642 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 LDHDQ86WU2 507 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 DDX60Q8IY21 1712 aaKnown RBP11.41□□□□□ -0.58
CCDC40-204ENST00000397545 SLURP2P0DP57 97 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 GRB10Q13322 594 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 LRRC36Q1X8D7 754 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 SLFN12LQ6IEE8 588 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 KRT80Q6KB66 452 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 SLC30A10Q6XR72 485 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 LCA5Q86VQ0 697 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 MYCBPAPQ8TBZ2 947 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ERP27Q96DN0 273 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 MTMR8Q96EF0 704 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 SNX25Q9H3E2 840 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 MAD2L2Q9UI95 211 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ANGPTL2Q9UKU9 493 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ENO4A6NNW6 628 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 UBE4BO95155 1302 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 HSPA4LO95757 839 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 KDSRQ06136 332 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 KCTD19Q17RG1 926 aaPredicted RBP11.41□□□□□ -0.58
CCDC40-204ENST00000397545 CAPRIN2Q6IMN6 1127 aaKnown RBP11.41□□□□□ -0.58
CCDC40-204ENST00000397545 KIRREL3Q8IZU9 778 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ATL2Q8NHH9 583 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 EXT2Q93063 718 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 NCAPGQ9BPX3 1015 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 PI4K2AQ9BTU6 479 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 TUBB6Q9BUF5 446 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ISCUQ9H1K1 167 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 SLC40A1Q9NP59 571 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 RNF146Q9NTX7 359 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 RNF181Q9P0P0 153 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 ARL2BPQ9Y2Y0 163 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 USP15Q9Y4E8 981 aaPredicted RBP11.41□□□□□ -0.58
CCDC40-204ENST00000397545 MYH15Q9Y2K3 1946 aa11.41□□□□□ -0.58
CCDC40-204ENST00000397545 CYTH3O43739 400 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 LPXNO60711 386 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 RTN2O75298 545 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 AGTP01019 485 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 FGRP09769 529 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 MAPK6Q16659 721 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 C1orf228Q6PIY5 440 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 TBC1D16Q8TBP0 767 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 ATXN7L3BQ96GX2 97 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 RTFDC1Q9BY42 306 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-204ENST00000397545 CXorf56Q9H5V9 222 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 HSPBP1Q9NZL4 362 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 NID2Q14112 1375 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 PFASO15067 1338 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 KRT38O76015 456 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 SARSP49591 514 aaKnown RBP11.4□□□□□ -0.58
CCDC40-204ENST00000397545 EPHA7Q15375 998 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 SLC15A2Q16348 729 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 IL17AQ16552 155 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 TMEM259Q4ZIN3 620 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 PAPD7Q5XG87 772 aaKnown RBP11.4□□□□□ -0.58
CCDC40-204ENST00000397545 SNRNP48Q6IEG0 339 aaKnown RBP11.4□□□□□ -0.58
CCDC40-204ENST00000397545 TRPM8Q7Z2W7 1104 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 PODNQ7Z5L7 613 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 LONP2Q86WA8 852 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 BTBD6Q96KE9 485 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 MED15Q96RN5 788 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms